LOCUS AK295189 2719 bp mRNA linear HUM 31-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60255 complete cds, highly similar to
HERV-R_7q21.2 provirus ancestral Env polyprotein precursor.
ACCESSION AK295189
VERSION AK295189.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2719)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2719
/clone="BRAWH3049038"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489813"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 502..2316
/codon_start=1
/note="highly similar to HERV-R_7q21.2 provirus ancestral
Env polyprotein precursor"
/protein_id="BAG58193.1"
/transl_table=1
/translation="MLGMNMLLITLFLLLPLSMLKGEPWEGCLHCTHTTWSGNIMTKT
LLYHTYYECAGTCLGTCTHNQTTYSVCDPGRGQPYVCYDPKSSPGIWFEIHVGSKEGD
LLNQTKVFPSGKDVVSLYFDVCQIVSMGSLFPVIFSSMEYYSSCHKNRYAHPACSTDS
PVTTCWDCTTWSTNQQSLGPIMLTKIPLEPDYKTSTSNSVNLTILEPDQPIWTTGLKA
PLGARVSGEEIGPGAYVYLYIIKKTRTRSTQQFRVFESFYEHVNQKLPEPPPLASNLF
AQLAENIASSLHVASCYVCGGMNMGDQWPWEARELMPQDNFTLTASSLEPAPSSQSIW
FLKTSIIGKFCIARWGKAFTDPVGELTCLGQQYYNETLGKTLWRGKSNNSESPHPSPF
SRFPSLNHSWYQLEAPNTWQAPSGLYWICGPQAYRQLPAKWSGACVLGTIRPSFFLMP
LKQGEALGYPIYDETKRKSKRGITIGDWKDSEWPPERIIQYYGPATWAEDGMWGYRTP
VYMLNRIIRLQAVLEIITNETAGALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCG
KFSLTNCCLELDDEGKVIKEITAKIQKLAHIPVQTWKG"
BASE COUNT 803 a 680 c 574 g 662 t
ORIGIN
1 ttcactgctc tgtgtcttct gctcctagag gcccagcttc tgtggcctcg ttacctgcag
61 gtattgggag atccacagct aagacgccag gacccactgg aagcctagaa atgttgcagg
121 aattgtgcct tggatccatc catccagtca gctgaaacca gcagcccagg acaagtggac
181 cagccaacag gacctagacc atgcaaccca gctgatccta cgatggaacc aaggtgccag
241 tgagatgaca acagccctgc tctggtcact ctggaagctg accagtccac gcacggctga
301 agcttgagga gacaacagcc ctgctctagt caccccagaa gctgactagt ctatgcacgg
361 ccgaagcttg agtcatcatc agggaagtaa atgtggttag aaatctgaag tccagtaatt
421 ttccttgtca tattaattac tttgctatta agctgtcact ttgcttagcc ttctcccccc
481 aggaaaaagc cttttctgtc catgctgggt atgaacatgc tactcatcac tttgttcttg
541 ctactcccct tatccatgtt aaaaggagaa ccctgggagg gatgcctcca ctgcacccac
601 actacgtggt cggggaacat catgactaaa accctgttgt atcacactta ttatgagtgt
661 gctgggacct gcctaggaac ttgtactcac aaccagacaa cctactcagt ctgtgaccca
721 ggaaggggcc agccttatgt gtgttatgac cctaagtctt cacctgggat ctggtttgaa
781 attcatgtcg ggtcaaagga aggggatctt ctaaaccaaa ccaaggtatt tccctctggc
841 aaggatgtcg tatccttata ctttgatgtt tgccagatag tatccatggg ctcactcttt
901 cccgtaatct tcagttccat ggagtactat agtagctgcc ataaaaatag gtatgcacac
961 cctgcttgtt ccaccgattc cccagtaaca acttgctggg actgcacaac gtggtccact
1021 aaccaacaat cactagggcc aattatgctt accaaaatac cattagaacc agattataaa
1081 acaagcacta gcaattctgt aaatcttacc atcttagagc cagatcagcc catatggaca
1141 acaggtttaa aagcaccgct aggggcacga gtcagcggtg aagaaattgg cccaggagcc
1201 tatgtctatc tatatatcat aaagaaaact cggacccgct caacccaaca gttccgagtt
1261 tttgagtcat tctatgagca tgttaaccag aaattgcctg agccccctcc cttggccagt
1321 aatttattcg cccaactggc tgaaaacata gccagcagcc tgcacgttgc ttcatgttat
1381 gtctgtgggg gaatgaacat gggagaccaa tggccatggg aagcaaggga actaatgccc
1441 caagataatt tcacactaac cgcctcttcc ctcgaacctg caccatcaag tcagagcatc
1501 tggttcttaa aaacctccat tattggaaaa ttctgtattg ctcgctgggg aaaggccttt
1561 acagacccag taggagagtt aacttgccta ggacaacaat attacaacga gacactagga
1621 aagactttat ggaggggcaa aagcaataat tctgaatcac cacacccaag cccattctct
1681 cgtttcccat ctttaaacca ttcttggtac caacttgaag ctccaaatac ctggcaggca
1741 ccctctggcc tctactggat ctgtgggcca caagcatatc gacaactgcc agctaaatgg
1801 tcaggggcct gtgtactggg gacaattagg ccgtccttct tcctaatgcc cctaaaacag
1861 ggagaagcct taggataccc catctatgat gaaactaaaa ggaaaagcaa aagaggcata
1921 actataggag attggaagga cagtgaatgg cctcctgaaa gaataattca atattatggc
1981 ccagccacct gggcagaaga tggaatgtgg ggataccgca ccccagttta catgcttaac
2041 cgcattataa gattgcaggc agtactagaa atcattacca atgaaactgc aggggccttg
2101 aatctgcttg cccagcaagc cacaaaaatg agaaatgtca tttatcaaaa tagactggcc
2161 ttagactacc tcctagccca ggaagaggga gtatgcggaa agttcagcct tactaactgc
2221 tgcctggaac ttgatgacga aggaaaggtc atcaaagaaa taactgctaa aatccaaaag
2281 ttagctcaca tcccagttca gacttggaaa ggatagtctc cagattccct tttcagaggt
2341 tggttctcat cccttggagg atttaaaacc ttagtacaaa tagtcctagc catattggga
2401 gtttgcctta tactcccttg tctcttaccc ctcattgtca aaaatatcca aacagccata
2461 gaggctcttg tggacagaca gactaccaca cgactaatgg ccctaactaa gtattaaccc
2521 ctgccaagaa aagagctact tcctcttgaa gtaaatgaag atagtgatgc tttctcttaa
2581 actttactta taaaaagcat caaagggggg aatgaagcag gaaatataaa aggaaaaaca
2641 agtaaaggga aaacaagtcc tttcctgacc agtctgactc actccaaagt cctgctggag
2701 ctatgataat tatctgcaa
//