LOCUS AK295177 3486 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ56626 complete cds, highly similar to Mus
musculus regulating synaptic membrane exocytosis 1 (Rims1),
transcript variant 5, mRNA.
ACCESSION AK295177
VERSION AK295177.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3486)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3486
/clone="BRAWH3048329"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489801"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 170..3112
/codon_start=1
/note="highly similar to Mus musculus regulating synaptic
membrane exocytosis 1 (Rims1), transcript variant 5, mRNA"
/protein_id="BAH12000.1"
/transl_table=1
/translation="MRKAKREKVETMLRNDSLSSDQSESVRPSPPKPHRSKRGGKKRQ
MSVSSSEEEGVSTPEYTSCEDVELESESVSEKGDLDYYWLDPATWHSRETSPISSHPV
TWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSL
ADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEIIVSRPIGDIPRIPE
SSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPGQLSVKLWYDKVGHQL
IVNVLQATDLPARVDGRPRNPYVKMYFLPDRSDKNKRRTKTVKKILEPKWNQTFVYSH
VHRRDFRERMLEITVWDQPRVQEEESEFLGEILIELETALLDDEPHWYKLQTHDESSL
PLPQPSPFMPRRHIHGESSSKKLQRSQRISDSDISDYEVDDGIGVVPPGYRSSARESK
STTLTVPEQQRTTHHRSRSVSPHRGNDQGKPRSRLPNVPLQRSLDEIHPTRRSRSPTR
HHDASRSPVDHRTRDVDSQYLSEQDRMHRQRSPTQSPPADTSFSSRRGRQLPQVPVRS
GSIEQASLVVEERTRQMKMKVHRFKQTTGSGSSQELDREQYSKYNIHKDQYRSCDNVS
AKSSDSDVSDVSAISRTSSASRLSSTSFMSEQSERPRGRISSFTPKMQGRRMGTSGRS
IMKSTSVSGEMYTLEHNDGSQSDTAVGTVGAGGKKRRSSLSAKVVAIVSRRSRSTSQL
SQTESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSSEGNLIFPGVRL
GADSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEVIRARSLTQKPG
SKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGD
YGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLTRRASQSSLESS
TGPPCIRS"
BASE COUNT 1081 a 794 c 842 g 769 t
ORIGIN
1 ttactcggct gagagaactg cggagaccag ggcgccgggc gccaagcagc taacgaacca
61 cagcccgccg gcgcccagac atgggccggt tcccgcagaa gccccggagc tcaaagccca
121 ggagcccctc aggaagcaga gccgcctgga ccccagctcg gcggtcctca tgcggaaggc
181 caagcgcgag aaggtggaga ccatgctgcg gaacgactct ttgagctcag accagtccga
241 gtcggtgcgg ccgtccccgc ccaagccgca ccggtccaag agaggcggca agaagcggca
301 gatgtcggtg agcagctctg aggaggaggg cgtgtcgacg cccgagtaca ccagctgcga
361 ggacgtggag ctggagagcg agagcgtcag cgagaaaggt gatttggatt attactggtt
421 ggatcctgcc acgtggcaca gccgggagac atcacctatt agttcgcatc ctgtaacgtg
481 gcaaccatct aaagaggggg accgattaat tggacgtgtt attcttaaca agagaacaac
541 catgcccaaa gactcaggtg cattgctggg tctgaaagtt gttggaggaa aaatgactga
601 cttaggacga cttggtgctt tcatcaccaa agtaaagaag ggtagcctag cagatgtagt
661 tggacaccta agagcagggg atgaagttct agaatggaat ggtaaacccc tgccgggagc
721 tacaaatgaa gaagtttaca acattatttt agaatcaaaa tcagaacctc aagttgaaat
781 tattgtttca aggcctattg gtgacattcc ccggattcct gagagctccc accctccact
841 ggagtccagt tcaagttcct ttgaatctca gaagatggaa aggccttcca tttctgttat
901 ttctccaaca agtcctggag ctctaaaaga tgccccacaa gtcttaccag ggcaactttc
961 tgtgaagttg tggtatgata aagtgggaca ccagctgatt gtaaatgttc tgcaagcaac
1021 agatctacct gctagagtag atggacgtcc tcgaaatccc tatgtaaaaa tgtattttct
1081 tccagataga agtgataaaa ataaaaggag gaccaaaaca gtaaagaaaa tactagaacc
1141 aaaatggaat caaacttttg tctattcaca tgtacatcgt agagatttta gagaacgaat
1201 gttagaaata actgtgtggg accaaccaag agtgcaagaa gaagaaagtg aatttcttgg
1261 agagatcctc atagaattgg agacagcgct tttagatgat gaaccgcatt ggtataaact
1321 tcagacacat gatgagtctt cactacctct gcctcagcca tcacctttca tgccaaggcg
1381 acatattcat ggagaaagct ctagcaaaaa gctacaaaga tctcagcgaa tcagtgatag
1441 tgacatctca gattatgagg ttgatgatgg tattggcgta gttcctccag gctataggtc
1501 tagtgctaga gaaagtaaat ctacaacatt aactgtgcca gaacagcaaa gaacaactca
1561 tcaccgctca cgttcagtat ctcctcatcg cggcaatgat cagggaaagc cgcgttcacg
1621 tttaccaaat gtgccattac agaggagttt agatgaaatt catccaacaa gaaggtcacg
1681 ttctccaacc agacaccatg atgcctcccg aagtccagtt gatcatagaa ccagagatgt
1741 ggatagtcag tatttatcag aacaagacag aatgcaccga cagagaagtc caacacaatc
1801 tcctccagca gacacatcgt tcagcagtcg caggggaaga cagctcccac aagtgccagt
1861 gagaagcggc agtatagaac aagcaagctt agtagtggag gagcgaacaa gacagatgaa
1921 aatgaaagtg catcgattta agcagacaac agggtctggt tctagtcaag aacttgatcg
1981 cgagcaatat tccaagtata acatacataa agatcagtac agaagctgtg ataacgtctc
2041 tgccaaatca tcagatagtg atgtcagtga tgtttccgcc atttcccgaa ccagcagtgc
2101 ctcacgcctc agcagcacaa gctttatgtc agagcaatct gagcgcccca ggggtagaat
2161 cagttcattt acccccaaaa tgcaaggcag acggatgggg acttcaggaa gatccatcat
2221 gaagagcacc agtgtcagtg gagagatgta cacactggag cataatgacg gcagccagtc
2281 agacacagct gtgggtacag ttggagcagg tggaaagaaa cggagatcca gccttagtgc
2341 caaagtggtt gccatagtgt ctcgaaggag tagaagcaca tcccagctta gtcaaacaga
2401 gtcgggccac aaaaagttaa aaagtaccat ccagagaagc acagaaacag gcatggcagc
2461 tgaaatgaga aagatggtaa ggcagccgag ccgagagtct actgatggca gcatcaacag
2521 ttacagctct gagggcaatt taatatttcc tggagtgcga ctgggagctg acagtcaatt
2581 cagtgatttt cttgatggat tgggaccagc ccagcttgtt ggccgccaaa cccttgccac
2641 ccctgcaatg ggtgatatac aaataggaat ggaggacaaa aagggccaat tagaagtgga
2701 agtcattaga gcacgaagcc tcacacaaaa gcctggttcc aaatctacac ctgctccata
2761 tgtcaaagta tatcttttgg aaaatggggc ctgtatagcc aagaagaaga caagaattgc
2821 acgaaaaacc cttgatcctt tgtatcagca gtctctggtt tttgatgaaa gtccacaggg
2881 taaagttctt caggtgattg tctggggaga ctatggcaga atggaccaca aatgctttat
2941 gggtgtggct cagatcttgt tggaagaact cgacctgtcc agcatggtga tcggatggta
3001 caaattgttc ccaccgtcct cactggtgga tcccacactc actcccctca cccggcgggc
3061 ttcccagtca tctctggaaa gttcaactgg gcctccctgt attcgatcat agtgaactca
3121 taccagagtc attccaataa aactctactt ttcaggataa taatctgaac cagatatttc
3181 atgatcgaaa gcattgttgg agacagacaa tcaacttgtg ttttgcctgt agtagttttt
3241 caataatatg tcccaattgt tatttaaaac atggcttcat atgacagaac aaggcaatct
3301 atcaaattta caggaagaat caacatgctg gtgagagtca ctgatgcttc taacaaatag
3361 aaaaagagga aactttaaat ccacgcatac acgtacacac acacatgcac acacacacac
3421 accaaattga acaaactgga aactctcact ctgtgaaaag ttgtattcta cacatttctg
3481 cacaga
//