LOCUS AK295001 3097 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ53578 complete cds, moderately similar to Mus
musculus regulating synaptic membrane exocytosis 1 (Rims1),
transcript variant 5, mRNA.
ACCESSION AK295001
VERSION AK295001.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3097)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3097
/clone="BRAWH3031769"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489625"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 231..2684
/codon_start=1
/note="moderately similar to Mus musculus regulating
synaptic membrane exocytosis 1 (Rims1), transcript
variant 5, mRNA"
/protein_id="BAH11945.1"
/transl_table=1
/translation="MCAPGIHVSSEGWEEVRSVDSEEGTIEARRAVAGDLDYYWLDPA
TWHSRETSPISSHPVTWQPSKEGDRLIGRVILNKRTTMPKDSGALLGLKVVGGKMTDL
GRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVE
IIVSRPIGDIPRIPESSHPPLESSSSSFESQKMERPSISVISPTSPGALKDAPQVLPG
QLSVKLWYDKVGHQLIVNVLQATDLPARVDGRPRNPYVKMYFLPDRSDKSKRRTKTVK
KILEPKWNQTFVYSHVHRRDFRERMLEITVWDQPRVQEEESEFLGEILIELETALLDD
EPHWYKLQTHDESSLPLPQPSPFMPRRHIHGESSSKKLQRSQRISDSDISDYEVDDGI
GVVPPVGYRSSARESKSTTLTVPEQQRTTHHRSRSVSPHRGNDQGKPRSRLPNVPLQR
SLDEIHPTRRSRSPTRHHDASRSPVDHRTRDVDSQYLSEQDSELLMLPRAKRGRSAEC
LHTTSELQPFLDRARSASTNCLRPDTSLHSPERERMHRQRSPTQSPPADTSFSSRRGR
QLSQVPVRSGSIEQESGHKKLKSTIQRSTETGMAAEMRKMVRQPSRESTDGSINSYSS
EGNLIFPGVRLGADSQFSDFLDGLGPAQLVGRQTLATPAMGDIQIGMEDKKGQLEVEV
IRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQ
GKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPPSSLVDPTLTPLT
RRASQSSLESSTGPPCIRS"
BASE COUNT 961 a 662 c 698 g 776 t
ORIGIN
1 gcacagtgcc tgcagtgacc tgagtcagtc atgcaaggag actttcttgt tctcacacca
61 atgttttatt tcagtttcca ttttctgctg gtcctgttgt tcaatgatat aagcagagtg
121 atgaaggagg cgcttcacac tcttcttaga taagatcttg agcagcagag agtggtttaa
181 acagcaaggc ttaaatctct caagctggat ttatttccaa gtttgctgtc atgtgtgcac
241 ctgggattca tgtctcttca gaagggtggg aagaagtgag gtctgttgat tccgaagagg
301 gaacaattga agctcgacga gcagttgctg gtgatttgga ttattactgg ttggatcctg
361 ccacgtggca cagccgggag acatcaccta ttagttcgca tcctgtaacg tggcaaccat
421 ctaaagaggg ggaccgatta attggacgtg ttattcttaa caagagaaca accatgccca
481 aagactcagg tgcattgctg ggtctgaaag ttgttggagg aaaaatgact gacttaggac
541 gacttggtgc tttcatcacc aaagtaaaga agggtagcct agcagatgta gttggacacc
601 taagagcagg ggatgaagtt ctagaatgga atggtaaacc cctgccggga gctacaaatg
661 aagaagttta caacattatt ttagaatcaa aatcagaacc tcaagttgaa attattgttt
721 caaggcctat tggtgacatt ccccggattc ctgagagctc ccaccctcca ctggagtcca
781 gttcaagttc ctttgaatct cagaagatgg aaaggccttc catttctgtt atttctccaa
841 caagtcctgg agctctaaaa gatgccccac aagtcttacc agggcaactt tctgtgaagt
901 tgtggtatga taaagtggga caccagctga ttgtaaatgt tctgcaagca acagatctac
961 ctgctagagt agatggacgt cctcgaaatc cctatgtaaa aatgtatttt cttccagata
1021 gaagtgataa aagtaaaagg aggaccaaaa cagtaaagaa aatactagaa ccaaaatgga
1081 atcaaacttt tgtctattca catgtacatc gtagagattt tagagaacga atgttagaaa
1141 taactgtgtg ggaccaacca agagtgcaag aagaagaaag tgaatttctt ggagagatcc
1201 tcatagaatt ggagacagcg cttttagatg atgaaccgca ttggtataaa cttcagacac
1261 atgatgagtc ttcactacct ctgcctcagc catcaccttt catgccaagg cgacatattc
1321 atggagaaag ctctagcaaa aagctacaaa gatctcagcg aatcagtgat agtgacatct
1381 cagattatga ggttgatgat ggtattggcg tagttcctcc agtaggctat aggtctagtg
1441 ctagagaaag taaatctaca acattaactg tgccagaaca gcaaagaaca actcatcacc
1501 gctcacgttc agtatctcct catcgcggca atgatcaggg aaagccgcgt tcacgtttac
1561 caaatgtgcc attacagagg agtttagatg aaattcatcc aacaagaagg tcacgttctc
1621 caaccagaca ccatgatgcc tcccgaagtc cagttgatca tagaaccaga gatgtggata
1681 gtcagtattt atcagaacaa gacagtgagc ttcttatgct gcccagagca aaacgaggac
1741 gaagtgcaga atgcctacat actaccagtg aactgcagcc ctttcttgac agggctagga
1801 gtgctagtac caactgcttg agaccagata ctagtttgca ttcaccagaa cgagaaagaa
1861 tgcaccgaca gagaagtcca acacaatctc ctccagcaga cacatcgttc agcagtcgca
1921 ggggaagaca gctctcacaa gtgccagtga gaagcggcag tatagaacaa gagtcgggcc
1981 acaaaaagtt aaaaagtacc atccagagaa gcacagaaac aggcatggca gctgaaatga
2041 gaaagatggt aaggcagccg agccgagagt ctactgatgg cagcatcaac agttacagct
2101 ctgagggcaa tttaatattt cctggagtgc gactgggagc tgacagtcaa ttcagtgatt
2161 ttcttgatgg attgggacca gcccagcttg ttggccgcca aacccttgcc acccctgcaa
2221 tgggtgatat acaaatagga atggaggaca aaaagggcca attagaagtg gaagtcatta
2281 gagcacgaag cctcacacaa aagcctggtt ccaaatctac acctgctcca tatgtcaaag
2341 tatatctttt ggaaaatggg gcctgtatag ccaagaagaa gacaagaatt gcacgaaaaa
2401 cccttgatcc tttgtatcag cagtctctgg tttttgatga aagtccacag ggtaaagttc
2461 ttcaggtgat tgtctgggga gactatggca gaatggacca caaatgcttt atgggtgtgg
2521 ctcagatctt gttggaagaa ctcgacctgt ccagcatggt gatcggatgg tacaaattgt
2581 tcccaccgtc ctcactggtg gatcccacac tcactcccct cacccggcgg gcttcccagt
2641 catctctgga aagttcaact gggcctccct gtattcgatc atagtgaact cataccagag
2701 tcattccaat aaaactctac ttttcaggat aataatctga accagatatt tcatgatcga
2761 aagcattgtt ggagacagac aatcaacttg tgttttgcct gtagtagttt ttcaataata
2821 tgtcccaatt gttatttaaa acatggcttc atatgacaga acaaggcaat ctatcaaatt
2881 tacaggaaga atcaacatgc tggtgagagt cactgatgct tctaacaaat agaaaaagag
2941 gaaactttaa atccacgcat acacgtacac acacacatgc acacacacac acaccaaatt
3001 gaacaaactg gaaactctca ctctgtgaaa agttgtattc tacacatttc tgcacagacc
3061 acaagcagtg ttatttccct gatgtttgag ttgtttt
//