LOCUS AK295000 2435 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ53988 complete cds, highly similar to
Nucleoporin NDC1.
ACCESSION AK295000
VERSION AK295000.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2435)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2435
/clone="BRAWH3031637"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489624"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 76..1980
/codon_start=1
/note="highly similar to Nucleoporin NDC1"
/protein_id="BAG58064.1"
/transl_table=1
/translation="MATAVSRPCAGRSRDILWRVLGWRIVASIVWSVLFLPICTTVFI
IFSRIDLFHPIQWLSDSFSDLYSSYVIFYFLLLSVVIIIISIFNVEFYAVITQGQYSF
LVVPCTGTNSFGSPAAQTCLNEYHLFFLLTGAFMGYSYSLLYFVNNMNYLPFPIIQQY
KFLRFRRSLLLLVKHSCVESLFLVRNFCILYYFLGYIPKAWISTAMNLHIDEQVHRPL
DTASGLLNLSLLYHVWLCGVFLLTTWYVSWILFKIYATEAHVFPVQPPFAEGSDECLP
KVLNSNPPPIIKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLNLLN
GMTQKLILYQEAAATNGRVSSSYPVEPKKLNSPEETAFQTPKSSQMPRPSVPPLVKTS
LFSSKLSTPDVVSPFGTPFGSSVMNRMAGIFDVNTCYGSPQSPRLIRRGPRLWTSASD
QQMTEFSNPSPSTSISAEGKTMRQPSVIYSWIQNKREQIKNFLSKRVLIMYFFSKHPE
ASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEAVDKYF
KLPHASSKPPRISGSLVDTSYKTLRFAFRASLKTAIYRITTTFGEHLNAVQASAEHQK
RLQQFLEFKE"
BASE COUNT 669 a 513 c 490 g 763 t
ORIGIN
1 cttcctgcct ttgaactgcg gtggcgggcg ggcgcacggt ctcctgtacg ccctagacta
61 ggggccgcca tctccatggc cacggccgtg agccggccct gcgccggcag gtcgcgggac
121 atactgtggc gcgttttggg ctggaggata gttgcaagta ttgtttggtc agtgctattt
181 ctacccatct gcaccacagt atttataatt ttcagcagga ttgatttgtt tcatcctata
241 cagtggctgt ctgattcttt cagtgacctg tatagttcct atgtaatctt ttacttcctg
301 ctgctgtcag tggtaataat aataataagt attttcaatg tggagttcta tgcagtgata
361 acccagggcc agtacagctt tcttgtggtt ccctgcactg gtactaacag ctttggtagc
421 cctgctgcgc aaacctgctt aaatgaatat catctttttt tcctactgac tggagcattt
481 atgggctata gctatagcct cctgtatttt gttaacaaca tgaactatct tccatttccc
541 atcatacagc aatacaagtt cttgcgtttt aggagatctc tgctcttatt agttaaacac
601 agttgtgtgg aatcactgtt cctggttaga aatttctgca ttttatatta ttttcttggc
661 tatattccca aagcttggat tagcactgct atgaaccttc acatagatga gcaggttcat
721 aggccacttg acacagcgag tggcctctta aatctctcgt tactctacca tgtctggctg
781 tgtggtgtct ttctcctgac gacttggtat gtctcatgga tactcttcaa aatctatgcc
841 acagaggctc atgtgtttcc tgttcaacca ccatttgcag aagggtcaga tgagtgcctt
901 ccaaaagtgt taaatagcaa tcctcccccc atcataaagt atttagcctt gcaggacctg
961 atgttgcttt ctcaatattc tccttcacga agacaagaag ttttcagcct cagccaacca
1021 ggtggacatc cccacaattg gacagccatt tcaagggagt gtttgaatct tttaaatggt
1081 atgactcaga aactgattct ctatcaagaa gctgctgcta cgaatgggag agtgtcttca
1141 tcttacccag tggaacctaa gaaattaaat tctccagaag aaactgcttt tcagacacca
1201 aaatctagcc agatgcctcg gccttcagtc ccaccattag ttaaaacatc actgttttct
1261 tcaaaattat ctacacctga tgttgtgagc ccatttggga ccccatttgg ctctagtgta
1321 atgaatcgga tggctggaat ttttgatgta aacacctgct atgggtcacc gcaaagtcct
1381 cggctaataa gaagggggcc aagattgtgg acatcagctt ctgatcagca aatgactgaa
1441 ttttctaatc cttctccatc tacctctatt agtgctgagg gtaagacaat gagacaaccc
1501 agtgtgattt attcatggat tcagaataaa cgtgaacaga ttaagaattt cttgtcaaaa
1561 cgggtgctga taatgtattt tttcagtaag cacccagagg cctccattca ggctgttttt
1621 tcagatgccc aaatgcatat ttgggcatta gaaggtctgt cgcacttagt agcagcatca
1681 tttacagagg atagatttgg agttgtccag acgacactac cagctatcct taatactttg
1741 ttgacactgc aagaggcagt cgacaagtac tttaagcttc ctcatgcttc cagtaaacca
1801 ccccggattt caggaagcct tgtggacact tcatataaaa cattaagatt tgcattcaga
1861 gcatcactga aaactgccat ctatcgaata actactacat ttggtgaaca tctgaatgct
1921 gtgcaagcat ctgcagaaca tcagaaaaga cttcaacagt tcttggagtt caaagaatag
1981 ttaagtaata taaactgtgt tcattacact gctgatacaa ctacagatgg gacagtaaat
2041 gttcagcatt cttggatcag aagaaaacgg actaattaga tgcttccttt gtcgtggtgg
2101 ttgctttgaa aactatactt taatgggaga aatcatggaa agaaattctc aacagaataa
2161 ctgaaaactg ccttttctgt accgattgct ttttgtgtgt gtggtataat aaaatcttta
2221 ttcaatttta cagaagcatt gatggcagtc gaaatgtctc tagctcatat aacttaatag
2281 taataactaa aaaactttta gaatttactt ttgaaaggag ggaagccagt tctgaaatga
2341 gtataggttg atttcatagt cttcttaatt aagagtttag ctctttgtaa actcaaaata
2401 cataaacttt ttaagtgtag tttcatttac tgaag
//