LOCUS AK294920 2766 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ56433 complete cds, highly similar to
Collagen alpha-2(IV) chain precursor.
ACCESSION AK294920
VERSION AK294920.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2766)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2766
/clone="BRAWH3024688"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489544"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 79..2571
/codon_start=1
/note="highly similar to Collagen alpha-2(IV) chain
precursor"
/protein_id="BAG58004.1"
/transl_table=1
/translation="MEFLDTRGKVGPGEGRATMAATEPRETQVHRGPPGLKGDRGSPG
MDGFQGMPGLKGRPGFPGSKGEAGFFGIPGLKGLAGEPGFKGSRGDPGPPGPPPVILP
GMKDIKGEKGDEGPMGLKGYLGAKGIQGMPGIPGLSGIPGLPGRPGHIKGVKGDIGVP
GIPGLPGFPGVAGPPGITGFPGFIGSRGDKGAPGRAGLYGEIGATGDFGDIGDTINLP
GRPGLKGERGTTGIPGLKGFFGEKGTEGDIGFPGITGVTGVQGPPGLKGQTGFPGLTG
PPGSQGELGRIGLPGGKGDDGWPGAPGLPGFPGLRGIRGLHGLPGTKGFPGSPGSDIH
GDPGFPGPPGERGDPGEANTLPGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPS
NISGAPGDKGAPGIFGLKGYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSG
PQGRPGVFGLPGEKGPRGEQGFMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGAPGI
AGIPQKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPGEPGFRGAPGKAGPQGRGGVSAV
PGFRGDEGPIGHQGPIGQEGAPGRPGSPGLPGMPGRSVSIGYLLVKHSQTDQEPMCPV
GMNKLWSGYSLLYFEGQEKAHNQDLGLAGSCLARFSTMPFLYCNPGDVCYYASRNDKS
YWLSTTAPLPMMPVAEDEIKPYISRCSVCEAPAIAIAVHSQDVSIPHCPAGWRSLWIG
YSFLMHTAAGDEGGGQSLVSPGSCLEDFRATPFIECNGGRGTCHYYANKYSFWLTTIP
EQSFQGSPSADTLKAGLIRTHISRCQVCMKNL"
BASE COUNT 597 a 803 c 913 g 453 t
ORIGIN
1 gagtgtggct gccgtgcgcc gggacaccag ggctccgcgc tccgcactca agaggcgttt
61 ctggattccc tggtgccgat ggaattcctg gacacccggg gcaaggtggg cccaggggaa
121 ggccgggcta cgatggctgc aacggaaccc agggagactc aggtccacag gggccccccc
181 gggctaaaag gagatagagg ctcacctggg atggatggtt tccaaggcat gcctggactc
241 aaagggagac ccgggtttcc agggagcaaa ggcgaggctg gatttttcgg aatacccggt
301 ctgaagggtc tggctggtga gccaggtttt aaaggcagcc gaggggaccc tgggccccca
361 ggaccacctc ctgtcatcct gccaggaatg aaagacatta aaggagagaa aggagatgaa
421 gggcctatgg ggctgaaagg atacctgggc gcaaaaggta tccaaggaat gccaggcatc
481 ccagggctgt caggaatccc tgggctgcct gggaggcccg gccacatcaa aggagtcaag
541 ggagacatcg gagtccccgg catccccggt ttgccaggat tccctggggt ggctggcccc
601 cctggaatta cgggattccc aggattcata ggaagccggg gtgacaaagg tgccccaggg
661 agagcaggcc tgtatggcga gattggcgcg actggtgatt tcggtgacat cggggacact
721 ataaatttac caggaagacc aggcctgaag ggggagcggg gcaccactgg aataccaggt
781 ctgaagggat tctttggaga gaagggaaca gaaggtgaca tcggcttccc tgggataaca
841 ggcgtgactg gagtccaagg ccctcctgga cttaaaggac aaacaggctt tccagggctg
901 actgggcctc cagggtcgca gggagagctg gggcggattg gactgcctgg tggcaaagga
961 gatgatggct ggccgggagc tccgggctta ccaggttttc cgggactccg tgggatccgc
1021 ggcttacacg gcttgccagg caccaagggc tttccaggat ccccaggttc tgacatccac
1081 ggagacccag gcttcccagg ccctcctggg gaaagaggtg acccaggaga ggccaacacc
1141 cttccaggcc ctgtgggagt cccaggacag aaaggagacc aaggagctcc aggggaacga
1201 ggcccacctg ggagcccagg acttcagggg ttcccaggca tcacaccccc ttccaacatc
1261 tctggggcac ctggtgacaa aggggcgcca gggatatttg gcctgaaagg ttatcggggc
1321 ccaccagggc caccaggttc tgctgctctt cctggaagca aaggtgacac agggaaccca
1381 ggagctccag gaaccccagg gaccaaagga tgggccgggg actccgggcc ccagggcagg
1441 cctggtgtgt ttggtctccc aggagaaaaa gggcccaggg gtgaacaagg cttcatgggg
1501 aacactggac ccaccggggc ggtgggcgac agaggcccca agggacccaa gggagaccca
1561 ggattccctg gtgcccccgg gactgtggga gcccccggga ttgcaggaat cccccagaag
1621 attgccgtcc aaccagggac agtgggtccc caggggaggc gaggcccccc tggggcaccg
1681 ggggagatgg ggccccaggg cccccccgga gaaccaggtt ttcgtggggc tccagggaaa
1741 gctgggcccc aaggaagagg tggtgtgtct gctgttcccg gcttccgggg agatgaagga
1801 cccataggcc accaggggcc gattggccaa gaaggtgcac caggccgtcc agggagcccg
1861 ggcctgccgg gtatgccagg ccgcagcgtc agcatcggct acctcctggt gaagcacagc
1921 cagacggacc aggagcccat gtgcccggtg ggcatgaaca aactctggag tggatacagc
1981 ctgctgtact tcgagggcca ggagaaggcg cacaaccagg acctggggct ggcgggctcc
2041 tgcctggcgc ggttcagcac catgcccttc ctgtactgca accctggtga tgtctgctac
2101 tatgccagcc ggaacgacaa gtcctactgg ctctctacca ctgcgccgct gcccatgatg
2161 cccgtggccg aggacgagat caagccctac atcagccgct gttctgtgtg tgaggccccg
2221 gccatcgcca tcgcggtcca cagtcaggat gtctccatcc cacactgccc agctgggtgg
2281 cggagtttgt ggatcggata ttccttcctc atgcacacgg cggcgggaga cgaaggcggt
2341 ggccaatcac tggtgtcacc gggcagctgt ctagaggact tccgcgccac accattcatc
2401 gaatgcaatg gaggccgcgg cacctgccac tactacgcca acaagtacag cttctggctg
2461 accaccattc ccgagcagag cttccagggc tcgccctccg ccgacacgct caaggccggc
2521 ctcatccgca cacacatcag ccgctgccag gtgtgcatga agaacctgtg agccggcgcg
2581 tgccaggaag ggccattttg gtgcttattc ttaacttatt acctcaggtg ccaacccaaa
2641 aattggcttt atttttttct taaaaaaaaa agtctaccaa aggaatttgc atccagcagc
2701 agcacttaga cctgccagcc actgtcaccg agcgggtgca agcactcggg gtccctggag
2761 ggcaag
//