LOCUS AK294786 3519 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60251 complete cds, highly similar to
Contactin-6 precursor.
ACCESSION AK294786
VERSION AK294786.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3519)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3519
/clone="BRAWH3009795"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489410"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 625..3495
/codon_start=1
/note="highly similar to Contactin-6 precursor"
/protein_id="BAG57911.1"
/transl_table=1
/translation="MSYHYRLDGGSLAINSPHTDQDIGMYQCLATNLLGTILSRKAKL
QFAYIEDFETKTRSTVSVREGQGVVLLCGPPPHFGDLSYAWTFNDNPLYVQEDNRRFV
SQETGNLYIAKVEPSDVGNYTCFITNKEAQRSVQGPPTPLVQRTDGVMGEYEPKIEVR
FPETIQAAKDSSVKLECFALGNPVPDISWRRLDGSPLPGKVKYSKSQAILEIPNFQQE
DEGFYECIASNLRGRNLAKGQLIFYAPPEWEQKIQNTHLSIYDNLLWECKASGKPNPW
YTWLKNGERLNPEERIQIENGTLIITMLNVSDSGVYQCAAENKYQIIYANAELRVLAS
APDFSKSPVKKKSFVQVGGDIVIGCKPNAFPRAAISWKRGTETLRQSKRIFLLEDGSL
KIYNITRSDAGSYTCIATNQFGTAKNTGSLIVKERTVITVPPSKMDVTVGESIVLPCQ
VSHDPSIEVVFVWFFNGDVIDLKKGVAHFERIGGESVGDLMIRNIQLHHSGKYLCTVQ
TTLESLSAVADIIVRGPPGPPEDVQVEDISSTTSQLSWRAGPDNNSPIQIFTIQTRTP
FSVGWQAVATVPEILNGKTYNATVVGLSPWVEYEFRVVAGNSIGIGEPSEPSELLRTK
ASVPVVAPVNIHGGGGSRSELVITWESIPEELQNGEGFGYIIMFRPVGSTTWSKEKVS
SVESSRFVYRNESIIPLSPFEVKVGVYNDEGEGSLSTVTIVYSGEDEPQLAPRGTSLQ
SFSASEMEVSWNAIAWNRNTGRVLGYEVLYWTDDSKESMIGKIRVSGNVTTKNITGLK
ANTIYFASVRAYNTAGTGPSSPPVNVTTKKSPPSQPPANIAWKLTNSKLCLNWEHVKT
MENESEVLGYKILYRQNRQSKTHILETNNTSAELLVPFEEDYLIEIRTVSDGGDGSSS
EEIRIPKMSSLSSRGIQFLEPSTHFLSIVIVIFHCFAIQPLI"
BASE COUNT 1080 a 713 c 807 g 919 t
ORIGIN
1 aataagagag attttctgat gacccgacag gagtgactat ctccagtcaa agaaagagga
61 gggtgaattt aatctttcat ggccctggaa tggcagctgc tctcagctct ctctgattct
121 gtgaaggttg atgaagatag agctggcttt caatgtagaa agaattttcc ttttgaatat
181 tccaaacgag agctttgcac atgtgcctca agaactgatt gtctggctcc gacaggaatg
241 cagcaggaga ggagcgtatt tcatgcttaa gaccagagaa gagccacgca atacttagtg
301 gataaaaggc ttgcagtccc agctgggaaa aagagtccca ttatctccca gctgcataga
361 cattccatac ggcttggttc tgcctggacg cacagcatgc ctggctgaga gcttgaaaca
421 gagttctgca gaaaaactgt aaagatcccg agacatttcc ctggtgatgg tcttttaagc
481 cgtcctattt ttactcagga gccacatgat gtcatttttc ctttggattt atcaaaatct
541 gaggtcatcc tgaattgtgc tgctaacggt tacccttcgc ctcattatag gtggaagcaa
601 aatggcacag acattgattt tactatgagt tatcactaca ggttggatgg aggcagtctt
661 gcaatcaata gcccccacac agatcaagat attggcatgt accagtgcct ggccaccaat
721 cttctgggga caattctgag tcggaaggca aagctccaat ttgcatatat tgaagacttt
781 gaaactaaaa caagaagcac agtatctgtc cgagaaggtc aaggtgtggt gcttctctgt
841 ggcccaccgc cacattttgg agatttatct tatgcatgga ccttcaatga taacccctta
901 tacgtccaag aggacaatag gcgatttgta tctcaagaga cgggaaactt gtacattgcc
961 aaagtggaac catcagatgt gggcaactac acttgcttta taactaacaa agaggcccag
1021 agaagtgttc aaggtccacc cactccatta gtgcagcgca ctgatggtgt gatgggggaa
1081 tatgaaccaa agattgaagt gcgttttcct gaaactatac aagctgcaaa ggattcatct
1141 gtaaaactgg aatgttttgc ccttggaaat ccagtccccg atattagttg gagaaggttg
1201 gacgggagcc cgttgccagg gaaagtcaag tacagcaaat cccaagctat ccttgaaatc
1261 ccgaacttcc aacaagaaga tgaaggcttt tatgagtgca ttgcaagcaa ccttcgagga
1321 agaaaccttg caaagggtca actcattttt tatgctcctc cagaatggga acagaaaatc
1381 caaaatacac acctctctat ctatgacaac ttgctctggg aatgtaaagc tagtggaaag
1441 ccaaaccctt ggtatacatg gttaaaaaat ggtgaacgac tcaacccaga ggagagaatt
1501 caaatagaaa atgggacact catcataacg atgctgaatg tgtcagattc tggtgtgtac
1561 caatgtgctg cagaaaacaa atatcagata atttatgcaa atgctgaatt gagagtttta
1621 gcctcagctc cagatttctc caaaagtcca gttaaaaaaa agtcttttgt tcaagttggt
1681 ggggatattg ttatcggatg caaaccaaat gcttttccca gggcagctat ctcttggaaa
1741 agaggaacgg agacccttag acaaagcaaa agaatatttc tcttggagga tggcagcctc
1801 aagatatata atattaccag gtcagatgct ggatcatata catgcatagc cacaaatcag
1861 tttggcactg caaagaacac tggcagcctc attgtaaaag agagaactgt cattaccgtc
1921 ccaccttcca aaatggatgt tacagttggc gagagtatag tgctaccatg ccaggtgtcc
1981 catgacccct ccattgaagt ggtatttgta tggtttttca atggagatgt catagactta
2041 aaaaaaggag tggctcattt tgaaaggatt ggaggagaat ctgttgggga tttgatgata
2101 aggaatattc agttacatca ttcaggaaaa tatctctgca cagtacaaac aaccctagaa
2161 agtttatctg cagtagccga tatcattgtt agaggtccac caggtcctcc tgaggatgtg
2221 caagtggaag acatttccag tactacttct caactaagtt ggagagcagg cccagataat
2281 aacagtccca ttcaaatatt tactattcag actcggacac cattttctgt gggttggcag
2341 gctgttgcta cagttccaga aattctcaat ggtaagacat acaatgcaac agtggttggt
2401 ttgagtcctt gggtggaata tgaatttcgt gttgttgccg gcaacagcat tgggattgga
2461 gaaccaagtg aaccatcaga attgttaaga actaaagcat cagtccctgt tgtggcacca
2521 gtaaacatcc atggaggtgg aggaagtcgg tctgaactcg tcattacgtg ggagtcaatt
2581 ccagaagaac tgcagaatgg ggagggattt ggatatatca tcatgttccg gccagtgggc
2641 tcgacaacct ggtccaagga gaaagtatca tctgtggaat catcaaggtt tgtttacaga
2701 aatgaaagca tcatcccact gtctcccttt gaagtcaaag tgggtgtgta taatgatgaa
2761 ggagaaggat ccctgagtac tgtgaccatt gtctactctg gggaagatga acctcaactg
2821 gccccaaggg gaacttctct ccagagtttt tctgcttctg aaatggaggt ttcatggaat
2881 gctattgcct ggaatagaaa cactggaaga gtgctgggct atgaggtctt atactggaca
2941 gatgactcca aagaatccat gataggtaaa attagagtca gtggaaatgt cacaaccaaa
3001 aacatcacgg ggctgaaagc taataccatc tactttgctt ccgtaagagc ttacaacact
3061 gctgggacag ggccctcaag ccccccagtc aatgttacca ccaaaaagtc tcctccaagc
3121 caaccaccag caaacattgc ctggaagctg acaaactcta aattatgctt gaactgggag
3181 catgtaaaaa ccatggaaaa tgagtctgaa gttttggggt acaagattct gtaccggcaa
3241 aacagacaga gtaaaactca tattttggaa acaaacaata catcagctga gcttctggtt
3301 ccatttgaag aagactactt aattgaaata agaacagtca gtgatggtgg agatggaagc
3361 agcagtgagg aaattaggat tccaaaaatg tcaagtttga gttccagagg aattcaattc
3421 ttagaaccta gcacccattt tctttccatt gtcattgtga tttttcactg ttttgctatt
3481 cagccactta tctgatgaat aaaaccataa atctttgag
//