LOCUS AK294736 3144 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ56896 complete cds, highly similar to Homo
sapiens SH3 multiple domains 1 (SH3MD1), mRNA.
ACCESSION AK294736
VERSION AK294736.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3144)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3144
/clone="BRAWH3004869"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489360"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 88..3036
/codon_start=1
/note="highly similar to Homo sapiens SH3 multiple
domains 1 (SH3MD1), mRNA"
/protein_id="BAH11864.1"
/transl_table=1
/translation="MSICCCFSFRDYGSSKRKSVWLSSWAESPKKDVTGADATAEPMI
LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLEAQNG
TRDDSDINTSKTGEEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGK
EGWAPASYLKKAKDDLPTRKKNLAGPVEIIGNIMEISNLLNKKASGDKETPPAEGEGH
EAPIAKKEISLPILCNASNGSAVGVPDRTVSRLAQGSPAVARIAPQRAQISSPNLRTR
PPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRGGQKAEVIDKNSGGW
WYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVPPPAPPSKPKEAEEGPTGASE
SQDSPRKLKYEEPEYDIPAFGFDSEPELSEEPVEDRASGERRPAQPHRPSPASSLQRA
RFKVGESSEDVALEEETIYENEVFRPYAEDTLSARGSSGDSDSPGSSSLSLTRKNSPK
SGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSSSSSSSSSLSKTSGD
LKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPFLNRAESQSQEKMDI
STLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSSSDLITLPATTPPCP
TKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPS
HYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQALNTVNQSKKATPPI
PSKPPGGFGKTSGTPAVKMRNGVRQVAVRPQSVFVSPPPKDNNLSCALRRNESLTATD
GLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRNSIPVSPVRPKPIEK
SQFIHNNLKDVYVSIADYEGDVETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGW
VPSNYLEKKN"
BASE COUNT 720 a 966 c 955 g 503 t
ORIGIN
1 acatgagcag cggcaccggg gaccgaccgc agccagcccg agggcgcccc tgcagctgca
61 gccccgcgct cgcgcccggc cctaaccatg tctatctgtt gttgcttctc tttcagggac
121 tatggcagtt ccaagaggaa atcagtgtgg ctgtccagct gggctgagtc gcccaagaag
181 gacgtgacag gtgccgacgc caccgccgag cccatgatcc tggaacagta cgtggtggtg
241 tccaactata agaagcagga gaactcggag ctgagcctcc aggccgggga ggtggtggat
301 gtcatcgaga agaacgagag cggctggtgg ttcgtgagca cttctgagga gcagggctgg
361 gtccctgcca cctacctgga ggcccagaat ggtactcggg atgactccga catcaacacc
421 tctaagactg gagaagagga gaagtatgtc accgtgcagc cttacaccag ccaaagcaag
481 gacgagattg gctttgagaa gggcgtcaca gtggaggtga tccggaagaa tctggaaggc
541 tggtggtata tcagatacct gggcaaagag ggctgggcgc cagcatccta cctgaagaag
601 gccaaggatg acctgccaac ccggaagaag aacctggccg gcccagtgga gatcattggg
661 aacatcatgg agatcagcaa cctgctgaac aagaaggcgt ctggggacaa ggaaactcca
721 ccagccgaag gcgagggcca tgaggccccc attgccaaga aggagatcag cctgcccatc
781 ctctgcaatg cctccaatgg cagtgccgtg ggcgttcctg acaggactgt ctccaggctg
841 gcccagggct ctccagctgt ggccaggatt gcccctcagc gggcccagat cagctccccg
901 aacctacgga caagacctcc accacgcaga gaatccagcc tggggttcca actgccaaag
961 ccaccagagc ctccttctgt tgaggtggag tactacacca ttgccgaatt ccagtcgtgc
1021 atttccgatg gcatcagctt tcggggtgga cagaaggcag aggtcattga taagaactca
1081 ggtggctggt ggtacgtgca gatcggtgag aaggagggct gggcccccgc atcatacatc
1141 gataagcgca agaagcccaa cctgagccgc cgcacaagca cgctgacccg gcccaaggtg
1201 cccccgccag caccccccag caagcccaag gaggccgagg agggccctac gggggccagt
1261 gagagccagg actccccgcg gaagctcaag tatgaggagc ctgagtatga catccctgca
1321 ttcggctttg actcagagcc tgagctgagc gaggagcccg tggaggacag agcctcaggg
1381 gagaggcggc ctgcccagcc ccaccggccc tcgccggcct cttctctgca gcgggcccgc
1441 ttcaaggtgg gtgagtcttc agaggatgtg gccctggaag aggagaccat ctatgagaat
1501 gaggtcttcc ggccatatgc agaggacacc ctgtcagcca gaggctcctc cggggacagc
1561 gactccccag gcagctcctc gctgtccctg accaggaaaa actcccccaa atcaggctcc
1621 cccaagtcat catcactcct aaagctcaag gcagagaaga atgcccaggc agaaatgggg
1681 aagaaccact cctcagcctc cttttcctca tccatcacca tcaacaccac ttgctgctcc
1741 tcctcttcct cctcctcctc ttccttgtcc aaaaccagtg gcgacctgaa gccccgctct
1801 gcttcggacg caggcatccg cggcactccc aaggtcaggg caaagaagga tgctgatgcg
1861 aacgctgggc tgacctcctg tccccgggcc aagccatcgg tccggcccaa gccattccta
1921 aaccgagcag agtcgcagag ccaagagaag atggacatca gcactttacg gcgccagctg
1981 agacccacag gccagctccg tggagggctc aagggctcca agagtgagga ttcggagctg
2041 cccccgcaga cggcctccga ggctcccagt gaggggtcta ggagaagctc atccgacctc
2101 atcaccctcc cagccaccac tcccccatgt cccaccaaga aggaatggga agggccagcc
2161 acctcgtaca tgacatgcag cgcctaccag aaggtccagg actcggagat cagcttcccc
2221 gcgggcgtgg aggtgcaggt gctggagaag caggagagcg ggtggtggta tgtgaggttt
2281 ggggagctgg agggctgggc cccttcccac tatttggtgc tggatgagaa cgagcaacct
2341 gacccctctg gcaaagagct ggacacagtg cccgccaagg gcaggcagaa cgaaggcaag
2401 tcagacagcc tggagaagat cgagaggcgc gtccaagcac tgaacaccgt caaccagagc
2461 aagaaggcca cgccccccat cccctccaaa cctcccgggg gctttggcaa gacctcaggc
2521 actccagcgg tgaagatgag gaacggagtg cggcaggtgg cggtcaggcc ccagtcggtg
2581 tttgtgtccc cgccacccaa ggacaacaac ctgtcctgcg ccctgcggag gaatgagtca
2641 ctcacggcca ctgatggcct ccgaggcgtc cgacggaact cctcctttag cactgctcgc
2701 tccgctgccg ccgaggccaa gggccgcctg gccgaacggg ctgccagcca gggttcagac
2761 tcacccctac tgcccgccca gcgcaacagc atccccgtgt cccctgtgcg ccccaagccc
2821 atcgagaagt ctcagttcat ccacaataac ctcaaagatg tgtacgtctc tatcgcagac
2881 tacgaggggg atgtggagac agcaggcttc caggaggggg tgtccatgga ggttctggag
2941 aggaacccta atggctggtg gtactgccag atcctggatg gtgtgaagcc cttcaaaggc
3001 tgggtgcctt ccaactacct tgagaaaaag aactagcaga gggcctgggc tcttccagcc
3061 tcagtgtgcc tctctggccg cccactggat gagcggtgag acgaacaaaa gggaaaggaa
3121 aaaatggggg tggggggtgg gggg
//