LOCUS AK294714 2517 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ56979 complete cds, highly similar to Rab
effector MyRIP.
ACCESSION AK294714
VERSION AK294714.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2517)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2517
/clone="BRAWH3001871"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000489338"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 460..2478
/codon_start=1
/note="highly similar to Rab effector MyRIP"
/protein_id="BAH11857.1"
/transl_table=1
/translation="MDTLAVALRVAEEAIEEAISKAEAYGDSLDKQNEASYLRDHKEE
LTEELATTILQKIIRKQKSKSEQQVEEEPGWPHPQSCSTKVADEGTSASPGGYRAPAA
LWRSQSAFSITGEEALKTPPVEAPSRQPRDQGQHPRAESALPSWKSVDRLDETNLAPV
LQSPDGNWVALKDGAPPPTRLLAKPKSGTFQALEVASSVASAYDEMGSDSEEDFDWSE
ALSKLCPRSRALPRNPQPQPTQAQSSDQGPIAASPSSALSPNPEAMCSDSETSSAGSS
REVGHQARLSWLQRKAPRNPAAEKMRLHGELDVNFNPQLASRETSDSSEPEEAPHTTD
RRARRWRRARLGSEEPSKEPSSPSAQLRDLDTHQVSDDLSETDISNEARDPQTLTDTT
EEKRRNRLYELAMKMSEKETSSGEDQESEPKTESENQKESLSSEDNSQSVQEELKKKF
SAVSLCNISTEVLKVINATEELIAGSTGPWESPQVPPDRQKGMFPRGTDQVRLDEQLT
SLEENVYLAAGTVYGLETQLTELEDAARCIHSGTDETHLADLEDQVATAAAQVHHAEL
QISDIESRISALTIAGLNIAPCVRFTRRRDQKQRTQVQTIDTSRQQRRKLPAPPVKAE
KIETSSVTTIKTFNHNFILQGSSTNRTKERKGTTKDLMEPALESAVMY"
BASE COUNT 678 a 676 c 699 g 464 t
ORIGIN
1 agtagcactg tgctgttcct tcactctggt attgctctct acccagagcc ctgtgtcttt
61 tcttaagaag actacctggc ttatcctctg tctgggcttt tctggccatg aggacatgga
121 gtgaagattt tggagctctg tgccctgtgt cctggcgttt aattatttct caagacacgt
181 gagctaaatt tgagtagaag agcttggcag aaagaaaacc accagttacg gcttctgagg
241 gcccaatctc tggaatggtt ctacaataat gtgaagagcc gcttcaagcg ctttggcagt
301 gccaaggttc tgaagaacct gtacaggaag caccggctgg agagtggcgc gtgcttcgac
361 attctaggag gaagcctttt tgagtcaaac ctggagaatg aaggaagcat ttctggcagt
421 gattcaacat tttataggca gtcagaagga catagtgtga tggacacctt ggctgtggcc
481 ctacgggtgg ctgaagaggc cattgaggaa gcaatttcca aagcagaggc atatggggac
541 agcctggaca agcaaaatga ggccagttac ctgcgggacc acaaggagga gctaactgag
601 gaactggcca cgacaatcct gcagaagatt atacgaaaac agaagagcaa aagtgagcag
661 caagtggaag aagagccagg atggccacat ccccagagtt gcagcacaaa ggtggcagat
721 gaggggacct cagcatcccc tggaggctac cgtgctcccg ctgccctctg gaggtcccag
781 tctgccttct caatcactgg agaagaagcc ctgaagaccc ctccagtgga ggctccatcg
841 aggcagccaa gggaccaagg ccaacacccg agagcagagt ctgctctgcc cagctggaag
901 agtgtggaca ggctggatga aacaaacctg gccccagttt tgcagagccc cgacgggaac
961 tgggtggccc tgaaggatgg cgctccaccc cccacccgac tactggccaa acctaagagc
1021 gggacgtttc aggccctgga ggtggcctcc agtgtggcat ctgcctacga tgagatgggc
1081 tccgatagcg aggaagactt tgactggagt gaggccttga gcaagctgtg tcccaggtcc
1141 cgggccctgc ccaggaaccc ccagcctcag cccacacagg cccagagctc tgaccaaggc
1201 cccatagctg cctccccatc ctctgcactc tcccccaacc ctgaggccat gtgctctgac
1261 tcggagacct cctccgcagg ctcttcccga gaagttgggc accaggccag actgtcctgg
1321 ttgcagagga aggcccccag gaaccctgca gctgagaaga tgcgcttgca tggagagctg
1381 gacgtgaact tcaaccccca gttggccagc agggagacct cggacagcag cgagccggag
1441 gaggcccccc acaccacaga ccggcgggcc aggaggtgga gaagagcccg attgggctca
1501 gaagagccaa gcaaagaacc atcttccccc agcgcccagc tccgggatct agacacacat
1561 caggtgtcgg atgatttatc agagacagac atcagcaatg aggctcggga cccccagact
1621 ctcacagaca ccacagagga gaaacggaga aacaggctgt acgagttagc aatgaaaatg
1681 agtgaaaagg agacttcttc aggggaggat caggagtctg agcccaagac agaatctgag
1741 aaccagaagg aaagtctgtc ctctgaagac aacagccaga gtgtccagga agagctgaag
1801 aagaagtttt ctgctgtttc tctctgcaac atctccacag aagtcctgaa agtcatcaat
1861 gccacagagg agttgatagc aggatctaca gggccctggg agtccccaca agtccctcct
1921 gacagacaga aggggatgtt tcctcgtggg acagaccaag tgagactgga tgagcagctg
1981 acttccctgg aagaaaatgt atacctggca gcaggcactg tgtatggact ggagacccag
2041 ctgactgagc tagaagatgc cgcccgctgc atccacagtg gcactgatga gacccatctg
2101 gcggatctgg aggaccaggt ggccacggct gcagcccaag tccaccatgc tgaactccag
2161 atttcagata ttgagagccg gatttcagcc ctgaccattg caggattaaa catagcacca
2221 tgtgtgcgct tcacaagaag acgggatcag aagcaaagga cccaggtaca aaccatagat
2281 acatcaaggc agcaaaggag gaaactgcct gctccaccgg tgaaagctga aaaaattgag
2341 acatcttcag tgactaccat taaaacattt aaccacaact tcattctcca aggctcctca
2401 acaaacagga ctaaggaaag gaaaggcacc accaaggatt tgatggagcc tgctctggag
2461 tcagctgtga tgtactgaca ccatggaatt ccactgccag tgacccactg cctccgg
//