LOCUS AK294625 1393 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ52855 complete cds, highly similar to Rattus
norvegicus Paf1, RNA polymerase II associated factor, mRNA.
ACCESSION AK294625
VERSION AK294625.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1393)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1393
/clone="BRAWH2007186"
/clone_lib="BRAWH2"
/db_xref="H-InvDB:HIT000489249"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 291..1157
/codon_start=1
/note="highly similar to Rattus norvegicus Paf1, RNA
polymerase II associated factor, mRNA"
/protein_id="BAG57806.1"
/transl_table=1
/translation="MATGPIPTGLCLRGLEWSAESSTAIASLISPSTPSSSPTPSTRT
VLLDPADEKLLEEEIQAPTSSKRSQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKI
GVSVKQQFTEEEIYKDRDSQITAIEKTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKM
WINPCAQVIFDSDPAPKDTSGAAALEMMSQAMIRGMMDEEGNQFVAYFLPVEETLKKR
KRDQEEEMDYAPDDVYDYKIAREYNWNVKNKASKGYEENYFFIFREGDGVYYNELETS
IQYSHMLYNLVA"
BASE COUNT 354 a 373 c 397 g 269 t
ORIGIN
1 gttgggtcct cagcgtcttg gcggcagttg gtggaaccgg agcttcgagt ccgtccccgg
61 tgctgcctgc gcgttcacct gagtctcgct ggagctcttc tcgcccgccc acctcatctc
121 aacccacttt ccgcggggag cggcgccaag ctgggccttc ctcggatcag gcgtcccctg
181 aagtcggcac gcccctctgc gtcccccttc ggtcccgcta ggaccccgtc cgggctgccg
241 tcgcctcgtc gctatggcgc ccaccatcca gacccaggcc cagcgggagg atggccacag
301 gcccaattcc caccggactc tgcctgagag gtctggagtg gtctgccgag tcaagtactg
361 caatagcctc cctgatatcc ccttcgaccc caagttcatc acctacccct tcgaccagaa
421 cagttcttct agatccagct gatgagaaac ttttggaaga ggagattcag gcccccacca
481 gctccaagag atcccagcag cacgcgaagg tggtgccatg gatgcgaaag acagagtaca
541 tctccactga gttcaaccgt tatggcatct ccaatgagaa gcctgaggtc aagattgggg
601 tttctgtgaa gcagcagttt accgaggaag aaatatacaa agacagggat agccagatca
661 cagccattga gaagactttt gaggatgccc agaaatcaat ctcacagcat tacagcaaac
721 cccgagtcac accggtggag gtcatgcctg tcttcccaga ctttaagatg tggatcaatc
781 catgtgctca ggtgatcttt gactcagacc cagcccccaa ggacacgagt ggtgcagctg
841 cgttggagat gatgtctcag gccatgatta ggggcatgat ggatgaggaa gggaaccagt
901 ttgtggccta tttcctgcct gtagaagaga cgttgaagaa acgaaagcgg gaccaggagg
961 aggagatgga ctatgcacca gatgatgtgt atgactacaa aattgctcgg gagtacaact
1021 ggaacgtgaa gaacaaagct agcaagggct atgaggaaaa ctacttcttc atcttccgag
1081 agggtgacgg ggtttactac aatgagttgg aaaccagtat tcagtacagt cacatgctgt
1141 acaaccttgt agcctaggag caataggcta caccattaca gcctagggtc cgccttagta
1201 agcgccgggc caaggctggg gttcagtcag gcaccaacgc cctgcttgtg gtcaaacatc
1261 gggacatgaa tgagaaggaa ctggaagctc aggaggcacg gaaggcccag ctagaaaacc
1321 acgaaccgga ggaggaagag gaagaggaga tggagacaga agagaaagaa gctgggggct
1381 cagatgagga gca
//