LOCUS AK294528 3551 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ59503 complete cds, highly similar to
Semaphorin-5B precursor.
ACCESSION AK294528
VERSION AK294528.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3551)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3551
/clone="BRAMY3017263"
/clone_lib="BRAMY3"
/db_xref="H-InvDB:HIT000489152"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 298..3471
/codon_start=1
/note="highly similar to Semaphorin-5B precursor"
/protein_id="BAH11799.1"
/transl_table=1
/translation="MVLAGPLAVSLLLPSLTLLVSHLSSSQDVSSEPSSEQQLCALSK
HPTVAFEDLQPWVSNFTYPGARDFSQLALDPSGNQLIVGARNYLFRLSLANVSLLQAT
EWASSEDTRRSCQSKGKTEEECQNYVRVLIVAGRKVFMCGTNAFSPMCTSRQVGNLSR
TIEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQ
YNSKWLNEPNFVAAYDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLED
TWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNL
SAISQAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPETGPNENLTERSLQDAQRLFL
MSEAVQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTASRS
LHGCYLEELHVLPPGRREPLRSLRILHSARALFVGLRDGVLRVPLERCAAYRSQGACL
GARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITACPVRNVTRDGGFGPWSPWQPCEHL
DGDNSGSCLCRARSCDSPRPRCGGLDCLGPAIHIANCSRNGAWTPWSSWALCSTSCGI
GFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGG
GTQSRRRACENGNSCLGCGVEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRF
RFTCRAPLADPHGLQFGRRRTETRTCPADGSGSCDTDALVEVLLRSGSTSPHTVSGGW
AAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPGEDICL
GLHTEEALCATQACPEGWSPWSEWSKCTDDGAQSRSRHCEELLPGSSACAGNSSQSRP
CPYSEIPVILPASSMEEATDCAGFNLIHLVATGISCFLGSGLLTLAVYLSCQHCQRQS
QESTLVHPATPNHLHYKGGGTPKNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYT
TTYYPSPLNKHSFRPEASPGQRCFPNS"
BASE COUNT 639 a 1216 c 1075 g 621 t
ORIGIN
1 gtgccagagc ccagctccgc cgagccgggc gggtcggcag cgcatccagc ggctgctggg
61 agcccgagcg cagcgggcgc gggcccgggt ggggactgca ccggagcgct gagagctgga
121 ggccgttcct gcgcggccgc cccattccca gaccggccgc cagcccatct ggttagctcc
181 cgccgctccg cgccgcccgg gagtcgggag ccgcggggaa ccgggcacct gcacccgcct
241 ctgggaggtc ttctcccctg tctgcctccc ggagctagga ctgcagaggg gcctatcatg
301 gtgcttgcag gccccctggc tgtctcgctg ttgctgccca gcctcacact gctggtgtcc
361 cacctctcca gctcccagga tgtctccagt gagcccagca gtgagcagca gctgtgcgcc
421 cttagcaagc accccaccgt ggcctttgaa gacctgcagc cgtgggtctc taacttcacc
481 taccctggag cccgggattt ctcccagctg gctttggacc cctccgggaa ccagctcatc
541 gtgggagcca ggaactacct cttcagactc agccttgcca atgtctctct tcttcaggcc
601 acagagtggg cctccagtga ggacacgcgc cgctcctgcc aaagcaaagg gaagactgag
661 gaggagtgtc agaactacgt gcgagtcctg atcgtcgccg gccggaaggt gttcatgtgt
721 ggaaccaatg ccttttcccc catgtgcacc agcagacagg tggggaacct cagccggact
781 attgagaaga tcaatggtgt ggcccgctgc ccctatgacc cacgccacaa ctccacagct
841 gtcatctcct cccaggggga gctctatgca gccacggtca tcgacttctc aggtcgggac
901 cctgccatct accgcagcct gggcagtggg ccaccgcttc gcactgccca atataactcc
961 aagtggctta atgagccaaa cttcgtggca gcctatgata ttgggctgtt tgcatacttc
1021 ttcctgcggg agaacgcagt ggagcacgac tgtggacgca ccgtgtactc tcgcgtggcc
1081 cgcgtgtgca agaatgacgt ggggggccga ttcctgctgg aggacacatg gaccacattc
1141 atgaaggccc ggctcaactg ctcccgcccg ggcgaggtcc ccttctacta taacgagctg
1201 cagagtgcct tccacttgcc ggagcaggac ctcatctatg gagttttcac aaccaacgta
1261 aacagcatcg cggcttctgc tgtctgcgcc ttcaacctca gtgctatctc ccaggctttc
1321 aatggcccat ttcgctacca ggagaacccc agggctgcct ggctccccat agccaacccc
1381 atccccaatt tccagtgtgg caccctgcct gagaccggtc ccaacgagaa cctgacggag
1441 cgcagcctgc aggacgcgca gcgcctcttc ctgatgagcg aggccgtgca gccggtgaca
1501 cccgagccct gtgtcaccca ggacagcgtg cgcttctcac acctcgtggt ggacctggtg
1561 caggctaaag acacgctcta ccatgtactc tacattggca ccgagtcggg caccatcctg
1621 aaggcgctgt ccacggcgag ccgcagcctc cacggctgct acctggagga gctgcacgtg
1681 ctgccccccg ggcgccgcga gcccctgcgc agcctgcgca tcctgcacag cgcccgcgcg
1741 ctcttcgtgg ggctgagaga cggcgtcctg cgggtcccac tggagaggtg cgccgcctac
1801 cgcagccagg gggcatgcct gggggcccgg gacccgtact gtggctggga cgggaagcag
1861 caacgttgca gcacactcga ggacagctcc aacatgagcc tctggaccca gaacatcacc
1921 gcctgtcctg tgcggaatgt gacacgggat gggggcttcg gcccatggtc accatggcaa
1981 ccatgtgagc acttggatgg ggacaactca ggctcttgcc tgtgtcgagc tcgatcctgt
2041 gattcccctc gaccccgctg tgggggcctt gactgcctgg ggccagccat ccacatcgcc
2101 aactgctcca ggaatggggc gtggaccccg tggtcatcgt gggcgctgtg cagcacgtcc
2161 tgtggcatcg gcttccaggt ccgccagcga agttgcagca accctgctcc ccgccacggg
2221 ggccgcatct gcgtgggcaa gagccgggag gaacggttct gtaatgagaa cacgccttgc
2281 ccggtgccca tcttctgggc ttcctggggc tcctggagca agtgcagcag caactgtgga
2341 gggggcacgc agtcgcggcg tcgggcctgc gagaacggca actcctgcct gggctgcggc
2401 gtggagttca agacgtgcaa ccccgagggc tgccccgaag tgcggcgcaa caccccctgg
2461 acgccgtggc tgcccgtgaa cgtgacgcag ggcggggcac ggcaggagca gcggttccgc
2521 ttcacctgcc gcgcgcccct tgcagacccg cacggcctgc agttcggcag gagaaggacc
2581 gagacgagga cctgtcccgc ggacggctcc ggctcctgcg acaccgacgc cctggtggag
2641 gtcctcctgc gcagcgggag cacctccccg cacacggtga gcgggggctg ggccgcctgg
2701 ggcccgtggt cgtcctgctc ccgggactgc gagctgggct tccgcgtccg caagagaacg
2761 tgcactaacc cggagccccg caacgggggc ctgccctgcg tgggcgatgc cgccgagtac
2821 caggactgca acccccaggc ttgcccaggt gaggacatct gtctcgggct gcacacggag
2881 gaggcactat gtgccacaca ggcctgccca gaaggctggt cgccctggtc tgagtggagt
2941 aagtgcactg acgacggagc ccagagccga agccggcact gtgaggagct cctcccaggg
3001 tccagcgcct gtgctggaaa cagcagccag agccgcccct gcccctacag cgagattccc
3061 gtcatcctgc cagcctccag catggaggag gccaccgact gtgcagggtt caatctcatc
3121 cacttggtgg ccacgggcat ctcctgcttc ttgggctctg ggctcctgac cctagcagtg
3181 tacctgtctt gccagcactg ccagcgtcag tcccaggagt ccacactggt ccatcctgcc
3241 acccccaacc atttgcacta caagggcgga ggcaccccga agaatgaaaa gtacacaccc
3301 atggaattca agaccctgaa caagaataac ttgatccctg atgacagagc caacttctac
3361 ccattgcagc agaccaatgt gtacacgact acttactacc caagccccct gaacaaacac
3421 agcttccggc ccgaggcctc acctggacaa cggtgcttcc ccaacagctg ataccgccgt
3481 cctggggact tgggcctctg tgcctctatg gagactatct tccagttgct gctcaacaga
3541 gttgttggct g
//