LOCUS AK294431 3040 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ52105 complete cds, highly similar to PDZ
domain-containing RING finger protein 4.
ACCESSION AK294431
VERSION AK294431.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3040)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3040
/clone="BRAMY3003631"
/clone_lib="BRAMY3"
/db_xref="H-InvDB:HIT000489055"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 263..2599
/codon_start=1
/note="highly similar to PDZ domain-containing RING
finger protein 4"
/protein_id="BAG57676.1"
/transl_table=1
/translation="MGCNLCTFQKREEHYKLLYEVSQVNGKDLSKATHEEAVEAFRNA
KEPIVVQVLRRTPLSRPAYGMASEVQLMNASTQTDITFEHIMALAKLRPPTPPVPDIC
PFLLSDSCHSLHPMEHEFYEDNEYISSLPADADRTEDFEYEEVELCRVSSQEKLGLTV
CYRTDDEEDTSIYVSEVDPNSIAAKDGRIREGDRILQINGEDVQNREEAVALLSNDEC
KRIVLLVARPEIQLDEGWLEDERNEFLEELNLEMLEEEHNEAMQPTANEVEQPKKQEE
EEGTTDTATSSSNNHEKDSGVGRTDESLRNDESSEQENAAEDPNSTSLKSKRDLGQSQ
DTLGSVELQYNESLVSGEYIDSDCIGNPDEDCERFRQLLELKCKIRNHGEYDLYYSSS
TIECNQGEQEGVEHELQLLNEELRNIELECQNIMQAHRLQKVTDQYGDIWTLHDGGFR
NYNTSIDMQRGKLDDIMEHPEKSDKDSSSAYNTAESCRSTPLTVDRSPDSSLPRVINL
TNKKNLRSTMAATQSSSGQSSKESTSTKAKTTEQGCSAESKEKVLEGSKLPDQEKAVS
EHTPYLSPYHSSSYRYANIPAHARHYQSYMQLIQQKSAVEYAQSQLSLVSMCKESQKC
SEPKMEWKVKIRSDGTRYITKRPVRDRILKERALKIKEERSGMTTDDDTMSEMKMGRY
WSKEERKQHLVRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKK
RNKKILDNWMTIQELMTHGAKSPDGTRVHNAFLSVTTV"
BASE COUNT 957 a 623 c 754 g 706 t
ORIGIN
1 acgggggagt gttgccatga actgactgga aactctgtgt gtgtatccgt gagtgcaaga
61 tacttaggga aagcgaagaa gagcatgctg ctacacacca ctctggctta cgcttccagc
121 taacagcggt ttgtctgtgt ttctggactg aagtgactga tgaaaaacag tagtcaagtc
181 tggagggtga ttccctttca gttcacttgc ctttcagttc tggggaaatt agaagatttg
241 ctctctctct ctgcttctta gaatgggctg caatttgtgc acttttcaga aaagagagga
301 acactacaaa ctgctgtatg aagtttccca ggtcaatggg aaggatcttt caaaggccac
361 tcatgaagag gcagtggaag cttttcgcaa tgccaaggag cccattgtag tgcaggtgtt
421 aaggcgaaca cctcttagta gaccagccta tgggatggct tcagaagtgc agcttatgaa
481 tgccagcact cagacggaca tcaccttcga acacatcatg gctctggcca agcttcgtcc
541 acctacccct ccagtgccag acatctgtcc attcctgctc tcagacagct gccattctct
601 acatccaatg gagcatgaat tttatgagga caatgagtat atttccagct tgcctgctga
661 tgcagacaga acagaagact ttgaatatga ggaggtcgag ttgtgtcgtg ttagcagtca
721 agagaagctg ggcctgacag tctgttaccg aacagatgat gaagaagaca ccagcattta
781 tgtcagcgag gttgacccaa atagcattgc tgccaaagac ggccggattc gagaagggga
841 tcggattttg caaataaatg gggaagatgt ccagaatcga gaagaagcag tggccttgct
901 gtctaacgat gagtgtaaga gaatcgtgct gcttgttgca aggccagaga ttcagctgga
961 tgaaggctgg ctggaagatg aaaggaatga attcttagag gagttaaact tggagatgtt
1021 ggaagaagag cataatgaag caatgcagcc cactgccaat gaggtggagc agccaaaaaa
1081 gcaagaagaa gaagaaggca caacagacac tgcaacatcc tcatccaaca accatgagaa
1141 ggacagtgga gtaggacgta cagatgaaag cttgcgaaat gatgagagct cagagcagga
1201 gaatgcagcc gaggacccca atagcacatc tttgaagagc aagagagacc tggggcagag
1261 ccaagacact ctgggaagtg ttgaacttca gtacaatgag agcctcgtat ctggtgaata
1321 cattgactca gactgcattg gcaacccaga tgaggactgt gaaagattca ggcagctctt
1381 ggagctcaaa tgcaagattc gaaatcatgg agagtatgac ctgtattact caagcagcac
1441 aattgaatgc aatcaagggg agcaagaggg agtggagcat gagctacagt tgcttaatga
1501 agaactgaga aacattgagc ttgagtgtca gaatatcatg caggctcaca ggctccagaa
1561 agtgacagac cagtatggag acatctggac attgcatgat ggaggattcc ggaattataa
1621 caccagcata gatatgcaaa ggggaaagct agatgacatc atggagcatc cagaaaagtc
1681 tgacaaggac agttctagtg cttacaacac agctgagagc tgcagaagta ctccgctcac
1741 tgtagaccgt tcccctgaca gttcccttcc aagggtgatc aacctcacca ataagaaaaa
1801 cctgagaagc acaatggcag ccacccagtc ctcttccgga cagagcagta aagagtcgac
1861 ctccaccaaa gccaaaacca ctgagcaagg ttgtagcgct gaaagcaagg agaaggtttt
1921 agaaggcagc aagcttcctg atcaagagaa ggcagtcagc gaacacaccc cttacctctc
1981 tccttaccac agctcctcat atagatatgc aaacatccca gcacacgccc ggcattatca
2041 aagctacatg cagttaattc aacagaaatc tgcagtcgag tatgctcaga gtcagctcag
2101 cttggtgagc atgtgcaagg agtctcagaa gtgttcagag cccaagatgg aatggaaggt
2161 gaaaattagg agcgacggga cacggtacat cacaaagaga cccgtgcgag accgaatcct
2221 gaaggaacgt gccttaaaga tcaaggaaga gcggagtggc atgaccacag acgatgacac
2281 catgagcgag atgaaaatgg ggcgctactg gagcaaagag gagagaaagc agcacctggt
2341 tagggccaaa gagcagcgcc gtcgccgtga gttcatgatg cgaagcaggt tagagtgtct
2401 caaggagagc cctcagagcg gcagtgaggg caagaaggag atcaatatca ttgaactgag
2461 tcacaaaaag atgatgaaaa agagaaacaa gaaaattttg gacaactgga tgacaatcca
2521 agaactgatg acccatgggg ccaagtctcc agatggcacg agagtccata atgccttctt
2581 gtcggtgacc actgtatgac cgaatgaatg gaatgcatgc gactgatttt aggaggatgc
2641 taccagtttc ggtagagtat gattgcctcg ttcaatgtgg cgtttttata tatattttgt
2701 gactctttat agtttaaatt ttttgtaagc aaaaaatacc tggtaatttt tcatttgttt
2761 ttcatatact ggtaccttct ttttggctga gatctttctt ttacttgtga tatattcata
2821 ttactcgttt ataaaaaatc aaaaacaaaa ggaaagaaaa caaaaaaact tgcacaaaaa
2881 tactgaggag ccaattaatt tcctacttca atgtatctaa tgtaagtgaa aatctggatt
2941 tatttctcta gtttacttat tttctacttt aataataact caatgccaaa atatttctat
3001 ccttgtttct tggcataata cattttaaat caaacctgtt
//