LOCUS AK293946 2357 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ58794 complete cds, highly similar to Pogo
transposable element with KRAB domain.
ACCESSION AK293946
VERSION AK293946.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2357)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2357
/clone="BRACE3033145"
/clone_lib="BRACE3"
/db_xref="H-InvDB:HIT000488570"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 292..1767
/codon_start=1
/note="highly similar to Pogo transposable element with
KRAB domain"
/protein_id="BAG57323.1"
/transl_table=1
/translation="MENEESDVKPPDWPNPMNATSQFPQPQHFDSFGLRLPRDITELP
EWSEGYPFYMAMGFPGYDLSADDIAGKFQFSRGMRRSYDAGFKLMVVEYAESTNNCQA
AKQFGALEKNVRDWRKVKPQLQNAHAMRRAFRGPKNGRFALVDQRVAEYVRYMQAKGD
PITREAMQLKALEIAQEMNIPEKGFKASLGWCRRMMRRYDLSLRHKVPVPQHLPEDLT
EKLVTYQRSVLALRRAHDYEVAQMGNADETPICLEVPSRVTVDNQGEKPVLVKTPGRE
KLKITAMLGVLADGRKLPPYIILRGTYIPPGKFPSGMEIRCHRYGWMTEDLMQDWLEV
VWRRRTGAVPKQRGMLILNGFRGHATDSVKNSMESMNTDMVIIPGGLTSQLQVLDVVV
YKPLNDSVRAQYSNWLLAGNLALSPTGNAKKPPLGLFLEWVMVAWNSISSESIVQGFK
KCHISSNLEEEDDVLWEIESELPGGGEPPKDCDTESMAESN"
BASE COUNT 633 a 592 c 666 g 466 t
ORIGIN
1 agctccgggc cggaccctcc ctcctcccac cacgtgtcct ccccgctccc tcccgagggg
61 ccgcgcgcac gggaggacgg agaggcggaa aggatggcgc tgtgacagcc gggccggagc
121 cctcgcgtcc ccgccccgcg ccctggccgc tgggcccggc gagatggagt ccacagccta
181 ccctctcaat ttgagcctga aagaagagga agaggaagaa gagattcaga gccgggaact
241 agaggacggc ccggcagaca tgcagaaagt acgaatctgc tctgagggcg gatggaaaat
301 gaagaatctg acgtaaagcc tccagactgg ccaaacccaa tgaatgctac ctcccagttt
361 cctcagcctc agcactttga cagctttggc ctccgtctgc ctcgggatat cacagagctg
421 cccgagtgga gtgaggggta ccccttctac atggccatgg gcttcccagg gtatgacctc
481 tcggctgatg acatagctgg gaagtttcag ttcagccggg gcatgcgccg cagttacgac
541 gcagggttca agctgatggt agtggaatat gctgagagta ccaacaactg ccaggctgcc
601 aagcagtttg gagcattgga aaaaaacgtt cgagactggc gcaaagtgaa gccacagctt
661 caaaacgccc acgccatgcg gcgggcattc cgaggcccca agaatgggag gtttgctctg
721 gtggaccagc gtgtggccga atatgtcaga tacatgcagg ccaaagggga ccccatcacc
781 cgggaggcga tgcagctgaa agctctcgaa atcgcccagg aaatgaacat tccagagaaa
841 gggttcaagg caagcttggg ttggtgtcga agaatgatga gaaggtatga cctgtctctg
901 aggcataaag tgcccgtgcc ccagcacctg ccggaagacc tgactgagaa actcgtcact
961 taccagcgca gtgtcctggc tctgcgcagg gcgcatgact atgaggtagc tcagatgggg
1021 aatgcagatg agacgcccat ttgtttagag gtgccatcac gggtaactgt tgataaccag
1081 ggcgaaaagc ctgtcttggt caagacacca ggcagggaaa aactgaaaat cacagcaatg
1141 cttggtgtct tggctgatgg gaggaagtta ccaccgtaca tcattttgag gggaacatat
1201 atccccccgg ggaagtttcc cagtgggatg gaaattcgct gccaccggta tgggtggatg
1261 actgaagact tgatgcagga ctggttggaa gtggtgtgga gacggaggac aggagcagtg
1321 cccaagcagc gagggatgct gatcttgaat ggcttccggg gccatgccac agattccgtg
1381 aagaactcca tggaaagcat gaacactgac atggtgatca tcccaggggg tctgacctca
1441 cagcttcagg tgctggatgt cgtggtctac aagccactga atgacagtgt gcgggcccag
1501 tactccaact ggcttctggc tgggaacctg gcgctgagcc caaccgggaa tgctaagaag
1561 ccacccctgg gcctctttct ggagtgggtc atggtcgcgt ggaatagcat ctcaagtgag
1621 tccatcgtcc aagggttcaa gaagtgccat atctccagca acttggagga ggaagacgat
1681 gtcctgtggg aaatcgagag tgagttgcca ggaggaggag aaccaccaaa agattgtgac
1741 accgaaagca tggctgagag caactgaagg gaaagggaaa gcaaatggaa ctctgattta
1801 aacagctggg gatgaaattc ctcaagatga ttattcctga aagtgtggat gcgctggatg
1861 cgcagggaac atcaggaaaa ggccacgggg ctctgaacag ccccggtcca gacagcagcc
1921 tgtacatcca tcccaggaca cagcccagcc cctccccaca ccatacaagg tatcagaaaa
1981 gtctaggacc tatcatttca tcagagacat gatcagaaaa gaaactgctt ctgccccatt
2041 tcttgttttg gagattactc catctgtcca tcaaaagaaa cctgtaaata tgaaagaaca
2101 aaggttattt cctggagaaa agacaattta ttcaacacca acgagggact catcatatgg
2161 gcacaactct ggtgtccttc tattgagaaa acctcaagta aagttttatt ctgcctttga
2221 aaatgcttcc aaaagtagac cctgtcccca cacaggtcaa gactacagag aaggctttgt
2281 agaaatgtgt cacctatgta cacctgctac ttacacattt cctcttttgg aaaaatgaga
2341 tacttagaat aacaaga
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