LOCUS AK293921 3829 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ55677 complete cds, highly similar to DNA
mismatch repair protein MSH6.
ACCESSION AK293921
VERSION AK293921.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3829)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3829
/clone="BRACE3029885"
/clone_lib="BRACE3"
/db_xref="H-InvDB:HIT000488545"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 52..3744
/codon_start=1
/note="highly similar to DNA mismatch repair protein MSH6"
/protein_id="BAG57302.1"
/transl_table=1
/translation="MSRQSTLYSFFPKSPALSDANKASARASREGGRAAAAPGASPSP
GGDAAWSEAGPGPRPLARSASPPKAKNLNGGLRRSVGTTYVTDKSEEDNEIESEEEVQ
PKTQGSRRSSRQIKKRRVISDSESDIGGSDVEFKPDTKEEGSSDEISSGVGDSESEGL
NSPVKVARKRKRMVTGNGSLKRKSSRKETPSATKQATSISSETKNTLRAFSAPQNSES
QAHVSGGGDDSSRPTVWYHETLEWLKEEKRRDEHRRRPDHPDFDASTLYVPEDFLNSC
TPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGLVFMKGNWAHSGFPEI
AFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQ
TYSVLEGDPSENYSKYLLSLKEKEEDSSGHTRAYGVCFVDTSLGKFFIGQFSDDRHCS
RFRTLVAHYPPVQVLFEKGNLSKETKTILKSSLSCSLQEGLIPGSQFWDASKTLRTLL
EEEYFREKLSDGIGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGGCVFYLKKCLI
DQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGST
EGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELL
KKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCK
IIGIMEEVADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLIT
PKAGFDSDYDQALADIRENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFT
TRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNY
KDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKT
FFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYV
PAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETASILMHATAHSLVLVDELGRG
TATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRLGHMACMVENECE
DPSQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSLRLFR
EVCLASERSTVDAEAVHKLLTLIKEL"
BASE COUNT 1121 a 751 c 956 g 1001 t
ORIGIN
1 gcttttagga gctccgtccg acagaacggt tgggccttgc cggctgtcgg tatgtcgcga
61 cagagcaccc tgtacagctt cttccccaag tctccggcgc tgagtgatgc caacaaggcc
121 tcggccaggg cctcacgcga aggcggccgt gccgccgctg cccccggggc ctctccttcc
181 ccaggcgggg atgcggcctg gagcgaggct gggcctgggc ccaggccctt ggcgcgctcc
241 gcgtcaccgc ccaaggcgaa gaacctcaac ggagggctgc ggagatcggt aggcacaact
301 tacgtaacag ataagagtga agaagataat gaaattgaga gtgaagagga agtacagcct
361 aagacacaag gatctaggcg aagtagccgc caaataaaaa aacgaagggt catatcagat
421 tctgagagtg acattggtgg ctctgatgtg gaatttaagc cagacactaa ggaggaagga
481 agcagtgatg aaataagcag tggagtgggg gatagtgaga gtgaaggcct gaacagccct
541 gtcaaagttg ctcgaaagcg gaagagaatg gtgactggaa atggctctct taaaaggaaa
601 agctctagga aggaaacgcc ctcagccacc aaacaagcaa ctagcatttc atcagaaacc
661 aagaatactt tgagagcttt ctctgcccct caaaattctg aatcccaagc ccacgttagt
721 ggaggtggtg atgacagtag tcgccctact gtttggtatc atgaaacttt agaatggctt
781 aaggaggaaa agagaagaga tgagcacagg aggaggcctg atcaccccga ttttgatgca
841 tctacactct atgtgcctga ggatttcctc aattcttgta ctcctgggat gaggaagtgg
901 tggcagatta agtctcagaa ctttgatctt gtcatctgtt acaaggtggg gaaattttat
961 gagctgtacc acatggatgc tcttattgga gtcagtgaac tggggctggt attcatgaaa
1021 ggcaactggg cccattctgg ctttcctgaa attgcatttg gccgttattc agattccctg
1081 gtgcagaagg gctataaagt agcacgagtg gaacagactg agactccaga aatgatggag
1141 gcacgatgta gaaagatggc acatatatcc aagtatgata gagtggtgag gagggagatc
1201 tgtaggatca ttaccaaggg tacacagact tacagtgtgc tggaaggtga tccctctgag
1261 aactacagta agtatcttct tagcctcaaa gaaaaagagg aagattcttc tggccatact
1321 cgtgcatatg gtgtgtgctt tgttgatact tcactgggaa agtttttcat aggtcagttt
1381 tcagatgatc gccattgttc gagatttagg actctagtgg cacactatcc cccagtacaa
1441 gttttatttg aaaaaggaaa tctctcaaag gaaactaaaa caattctaaa gagttcattg
1501 tcctgttctc ttcaggaagg tctgataccc ggctcccagt tttgggatgc atccaaaact
1561 ttgagaactc tccttgagga agaatatttt agggaaaagc taagtgatgg cattggggtg
1621 atgttacccc aggtgcttaa aggtatgact tcagagtctg attccattgg gttgacacca
1681 ggagagaaaa gtgaattggc cctctctgct ctaggtggtt gtgtcttcta cctcaaaaaa
1741 tgccttattg atcaggagct tttatcaatg gctaattttg aagaatatat tcccttggat
1801 tctgacacag tcagcactac aagatctggt gctatcttca ccaaagccta tcaacgaatg
1861 gtgctagatg cagtgacatt aaacaacttg gagatttttc tgaatggaac aaatggttct
1921 actgaaggaa ccctactaga gagggttgat acttgccata ctccttttgg taagcggctc
1981 ctaaagcaat ggctttgtgc cccactctgt aaccattatg ctattaatga tcgtctagat
2041 gccatagaag acctcatggt tgtgcctgac aaaatctccg aagttgtaga gcttctaaag
2101 aagcttccag atcttgagag gctactcagt aaaattcata atgttgggtc tcccctgaag
2161 agtcagaacc acccagacag cagggctata atgtatgaag aaactacata cagcaagaag
2221 aagattattg attttctttc tgctctggaa ggattcaaag taatgtgtaa aattataggg
2281 atcatggaag aagttgctga tggttttaag tctaaaatcc ttaagcaggt catctctctg
2341 cagacaaaaa atcctgaagg tcgttttcct gatttgactg tagaattgaa ccgatgggat
2401 acagcctttg accatgaaaa ggctcgaaag actggactta ttactcccaa agcaggcttt
2461 gactctgatt atgaccaagc tcttgctgac ataagagaaa atgaacagag cctcctggaa
2521 tacctagaga aacagcgcaa cagaattggc tgtaggacca tagtctattg ggggattggt
2581 aggaaccgtt accagctgga aattcctgag aatttcacca ctcgcaattt gccagaagaa
2641 tacgagttga aatctaccaa gaagggctgt aaacgatact ggaccaaaac tattgaaaag
2701 aagttggcta atctcataaa tgctgaagaa cggagggatg tatcattgaa ggactgcatg
2761 cggcgactgt tctataactt tgataaaaat tacaaggact ggcagtctgc tgtagagtgt
2821 atcgcagtgt tggatgtttt actgtgcctg gctaactata gtcgaggggg tgatggtcct
2881 atgtgtcgcc cagtaattct gttgccggaa gatacccccc ccttcttaga gcttaaagga
2941 tcacgccatc cttgcattac gaagactttt tttggagatg attttattcc taatgacatt
3001 ctaataggct gtgaggaaga ggagcaggaa aatggcaaag cctattgtgt gcttgttacc
3061 ggaccaaata tggggggcaa gtctacgctt atgagacagg ctggcttatt agctgtaatg
3121 gcccagatgg gttgttacgt ccctgctgaa gtgtgcaggc tcacaccaat tgatagagtg
3181 tttactagac ttggtgcctc agacagaata atgtcaggtg aaagtacatt ttttgttgaa
3241 ttaagtgaaa ctgccagcat actcatgcat gcaacagcac attctctggt gcttgtggat
3301 gaattaggaa gaggtactgc aacatttgat gggacggcaa tagcaaatgc agttgttaaa
3361 gaacttgctg agactataaa atgtcgtaca ttattttcaa ctcactacca ttcattagta
3421 gaagattatt ctcaaaatgt tgctgtgcgc ctaggacata tggcatgcat ggtagaaaat
3481 gaatgtgaag accccagcca ggagactatt acgttcctct ataaattcat taagggagct
3541 tgtcctaaaa gctatggctt taatgcagca aggcttgcta atctcccaga ggaagttata
3601 caaaagggac atagaaaagc aagagaattt gagaagatga atcagtcact acgattattt
3661 cgggaagttt gcctggctag tgaaaggtca actgtagatg ctgaagctgt ccataaattg
3721 ctgactttga ttaaggaatt atagactgac tacattggaa gctttgagtt gacttctgac
3781 aaaggtggta aattcagaca acattatgat ctaataaact ttatttttt
//