LOCUS AK293865 4304 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60100 complete cds, highly similar to
Peregrin.
ACCESSION AK293865
VERSION AK293865.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4304)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4304
/clone="BRACE3020912"
/clone_lib="BRACE3"
/db_xref="H-InvDB:HIT000488489"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 421..3780
/codon_start=1
/note="highly similar to Peregrin"
/protein_id="BAG57257.1"
/transl_table=1
/translation="MGVDLDVKTFCHNLRATKPPYECPVETCRKVYKSYSGIEYHLYH
YDHDNPPPPQQTPLRKHKKKGRQSRPANKQSPSPSEVSQSPGREVMSYAQAQRMVEVD
LHGRVHRISIFDNLDVVSEDEEAPEEAPENGSNKENTETPAATPKSGKHKNKEKRKDS
NHHHHHNVSASTTPKLPEVVYRELEQDTPDAPPRPTSYYRYIEKSAEELDEEVEYDMD
EEDYIWLDIMNERRKTEGVSPIPQEIFEYLMDRLEKESYFESHNKGDPNALVDEDAVC
CICNDGECQNSNVILFCDMCNLAVHQECYDVPYIPEGQWLCRRCLQSPSRAVDCALCP
NKGGAFRQTDDGRWAHVVCALWIPEVCFANTVFLEPIDSIEHIPPARWKLTCYICKQR
GSGACIQCHKANCYTAFHVTCAQQAGLYMKMEPVRETGANGTSFSVRKTAYCDIHTPP
GSARRLPALSHSEGEEDEDEEEDEGKGWSSEKVKKAKAKSRIKMKKARKILAEKRAAA
PVVSVPCIPPHRLSKITNRLTIQRKSQFMQRLHSYWTLKRQSRNGVPLLRRLQTHLQS
QRNCDQVGRDSEDKNWALKEQLKSWQRLRHDLERARLLVELIRKREKLKRETIKVQQI
AMEMQLTPFLILLRKTLEQLQEKDTGNIFSEPVPLSEVPDYLDHIKKPMDFFTMKQNL
EAYRYLNFDDFEEDFNLIVSNCLKYNAKDTIFYRAAVRLREQGGAVLRQARRQAEKMG
IDFETGMHIPHSLAGDEATHHTEDAAEEERLVLLENQKHLPVEEQLKLLLERLDEVNA
SKQSVGRSRRAKMIKKEMTALRRKLAHQRETGRDGPERHGPSSRGSLTPHPAACDKDG
QTDSAAEESSSQETSKDLPANGFSGGNQPVKKSFLVYRNDCSLPRSSSDSESSSSSSS
SAASDRTSTTPSKQGRGKPSFSRGTSPEDSSEDTSGTENEAYSVGTGRGVGHSMVRKS
LGRGAGWLSEDEDSPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPL
EVLKLGEQMTQEAREHLYLVLFFDNKRTWQWLPRTKLVPLGVNQDLDKEKMLEGRKSN
IRKSVQIAYHRALQHRSKVQGEQSSETSDSD"
BASE COUNT 1024 a 1248 c 1274 g 758 t
ORIGIN
1 acgtttaccc tgcgcagacg ccgtcgccgc cgctgctgcc gccgccgctg ccacagcctt
61 tgccgccacg gtctccgccg ccgctgtcct cgcgctgcct ctgggagcct ccattgttcc
121 agcagcgccc ggtcccgaga ccgggcatct tgggggctcg cgaaacgggc ggcggccgac
181 ggagttgaga ccccagggcg ccggcgggac caggagcggc aggggtcagc tcaggaatcc
241 cggggagccg ggaccaaagc gtggggcggc agggggccgg ggtggcgagg tctacggtct
301 ccggagttgg ggctccccct tcccggcccg actttccccg ccgacctccc caagtggggt
361 cggagccccg gcgggcgccc ccggcgatga gcccggactc gaggtggccg atgtgacagc
421 atgggggtgg accttgatgt gaagactttc tgccacaact tgcgggcgac taagccacca
481 tacgagtgcc cggtggagac ctgccgaaag gtctacaaga gttacagtgg tattgagtac
541 cacctgtacc actatgacca cgacaaccca ccacccccac aacaaactcc actccgcaag
601 cacaagaaaa aggggcgcca gtcacgccca gccaacaagc agtcacccag cccctcagag
661 gtctcacagt caccaggccg tgaggtgatg agctatgcac aggcccagcg catggtggag
721 gtggacttgc atggccgcgt ccaccgcatc agcatctttg acaacctgga tgtggtgtca
781 gaggatgagg aagcccccga ggaggcccct gagaatggca gcaacaagga gaacactgag
841 acaccagctg ctactcccaa gtcaggcaaa cataagaaca aggagaagcg caaggactcc
901 aaccatcacc accaccacaa tgtttctgcg agcaccactc ccaagctgcc agaggtggtc
961 tatcgggagc tggaacagga cacccctgat gccccacccc ggccaacttc ctattaccgg
1021 tacatcgaga agtctgcaga ggagctggac gaggaagtag agtatgacat ggacgaggag
1081 gactacatct ggctggatat catgaatgag cgtcggaaga cagagggtgt aagtcccatc
1141 ccgcaggaga tctttgagta cctaatggac cgactggaga aggagtcgta ctttgagagt
1201 cataataaag gcgaccctaa cgcgctagtg gacgaggatg ctgtttgctg tatctgcaat
1261 gatggtgagt gccagaacag caatgtcatc ctcttctgtg acatgtgcaa cctggccgtg
1321 caccaggagt gctacgatgt cccctatatc cctgagggcc agtggctgtg ccgccgttgc
1381 ctgcagtcac cctctcgtgc tgtggattgt gccctgtgcc ccaacaaggg cggtgccttc
1441 aggcagacag atgacgggcg ctgggcccat gtggtgtgtg ccttgtggat ccctgaggtc
1501 tgcttcgcca acacggtctt cctagagcct attgacagca ttgagcacat cccaccagct
1561 cgctggaagc tcacctgcta catttgcaaa caacggggct caggggcctg catccagtgc
1621 cacaaggcca actgttacac agctttccat gtgacatgcg cccagcaggc tggcctttac
1681 atgaagatgg agcctgtgcg ggagacaggc gccaacggca cctctttcag tgtccgcaag
1741 acagcctact gcgacatcca cacgcctcca ggttcagcac gccgactgcc tgccctgtcc
1801 cacagcgagg gtgaggagga tgaagatgag gaggaggatg agggtaaggg ctggagctca
1861 gagaaagtca agaaggccaa ggccaagtcc cggatcaaaa tgaagaaggc acggaagatc
1921 ctggcagaga agcgggcagc agcacctgtg gtgtcagtgc cctgcatccc accacacagg
1981 cttagtaaaa tcaccaaccg cctgaccatc caaaggaaga gccagttcat gcagaggctg
2041 cacagctact ggacactgaa gcggcagtca cggaatgggg tcccattgct acgtcgcctg
2101 cagacacacc tgcaatctca gaggaactgt gaccaagttg ggagagattc tgaggataag
2161 aactgggccc ttaaagaaca gctcaagtcc tggcagcggc tccggcatga cttggagcga
2221 gctcggctgc tcgtggaatt gatccgcaag cgggaaaaac tcaaaaggga gacgatcaag
2281 gttcagcaga ttgccatgga gatgcagctg actcctttcc tcatcctcct tcgcaaaacc
2341 ttggagcagc tccaagagaa ggacacaggc aacatcttca gcgagccggt ccctctgtct
2401 gaggtacctg actacctaga ccacatcaaa aagcccatgg actttttcac catgaagcag
2461 aacttggagg cttaccgcta cctgaatttt gatgattttg aggaggactt caacctcatc
2521 gtcagcaact gcctcaagta taacgccaag gacaccatct tctaccgggc agcagtgcgg
2581 cttcgtgagc agggtggtgc tgtgctccgc caggcccggc gccaggcaga aaaaatgggc
2641 attgactttg agacgggcat gcatatcccc cacagcctgg ctggagatga ggccacacac
2701 cacactgaag atgcagccga ggaagagcgg ctggtcttgc tggagaacca gaagcacctg
2761 ccagtggaag aacagctaaa gctgcttctg gagcggctgg acgaagtgaa tgccagcaag
2821 cagagtgtgg gccgctcacg gcgtgcaaag atgatcaaga aagagatgac ggcactgcgg
2881 cggaagcttg cccatcagcg agagacggga cgtgatggcc ctgagcggca tggcccctcg
2941 agccggggta gtctgacacc ccacccggca gcctgtgaca aggatgggca gacagatagt
3001 gcggcagagg agagcagcag ccaggagaca agcaaagact taccagccaa tggcttcagc
3061 ggtggaaacc aaccagtgaa gaagagtttc ttggtatacc gtaatgactg cagccttccc
3121 cggagcagct cagactctga gtccagcagc agtagcagta gcagcgctgc ttcagaccgg
3181 accagcacaa cgccctcaaa acaaggccgg ggcaaaccct ccttctctcg gggcacttcc
3241 ccagaggaca gcagtgagga tacctcaggc actgagaatg aggcctactc cgtgggcact
3301 ggccgcggcg tgggccacag catggtaagg aagagtctgg gccggggagc tggctggctg
3361 tcagaggatg aggactcccc gctggatgct ctggacctcg tgtgggccaa atgccgaggc
3421 tatccatcat acccagctct gatcattgat ccaaagatgc cccgagaagg tatgttccac
3481 catggggttc ccatccctgt gcccccactg gaggtgctga aacttgggga gcagatgacc
3541 caggaagccc gagagcatct ctacctcgtc ctcttctttg acaacaaacg aacctggcag
3601 tggctgccca ggaccaagct ggttcctctg ggtgtgaacc aggacctaga caaggagaag
3661 atgctggagg gccgcaagtc caacatccgc aagtcagtac agatcgccta ccacagggct
3721 ctgcagcacc gcagcaaggt gcaaggcgag cagagcagtg agaccagcga tagtgattga
3781 tactgctcaa cacagcccaa cctatagtgc cctgtgactt ctctcctccc ctttgctcac
3841 tgtcctggag tggcaccggc ctctgcactg actcatttct ggtcttgggg ccagtctcag
3901 gggaagctgg gtgggggagg tccctcctgc cctaagtgca gctggactgt acagaacact
3961 ccaagggcca atggcagttc agcgcaagga gagggagggc ccacaggtca gaaaaagctc
4021 cagagacctc acagcattgt agggcggggt ggtgggccaa agttaggaca ctgcgtaaaa
4081 caggccatcc caccacctct acctgctcat gccaggagaa tccataactg cctagaggcc
4141 tggggcccct accggtcgtg aggtgagtgg gcatctgtcc agcctggaag aggggcacta
4201 ggtgactccc tcccctgctg ttgtaaatac tgtaattatc ggagaattta aattattctc
4261 atttgtaact gcgtttccgg gtcgcgccag agtcatttgg tact
//