LOCUS AK293839 3251 bp mRNA linear HUM 21-JAN-2009
DEFINITION Homo sapiens cDNA FLJ56058 complete cds, highly similar to Castor
homolog 1 zinc finger protein.
ACCESSION AK293839
VERSION AK293839.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3251)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3251
/clone="BRACE3016922"
/clone_lib="BRACE3"
/db_xref="H-InvDB:HIT000488463"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 107..3199
/codon_start=1
/note="highly similar to Castor homolog 1 zinc finger
protein"
/protein_id="BAH11609.1"
/transl_table=1
/translation="MKVDYLSEFGFRLSDYEFGTKEKRMDLGTAEGTRCTDPPAGKPA
MAPKRKGGLKLNAICAKLSRQVVVEKRADAGSHTEGSPSQPRDQERSGPESGAARAPR
SEEDKRRAVVEKWVNGEYSEEPAPTPVLGRIAREGLELPPEGVYMVQPQGCSDEEDHA
EEPSKDGGALEEKDSDGAASKEDSGPSTRQASGEASSLRDYAASTMTEFLGMFGYDDQ
NTRDELARKISFEKLHAGSTPEAATSSMLPTSEDTLSKRARFSKYEEYIRKLKAGEQL
SWPAPSTKTEERVGKEVVGTLPGLRLPSSTAHLETKATILPLPSHSSVQMQNLVARAS
KYDFFIQKLKTGENLRPQNGSTYKKPSKYDLENVKYLHLFKPGEGSPDMGGAIAFKTG
KVGRPSKYDVRGIQKPGPAKVPPTPSLAPAPLASVPSAPSAPGPGPEPPASLSFNTPE
YLKSTFSKTDSITTGTVSTVKNGLPTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAY
QYREHYHCLDPECNYQRFTSKQDVIRHYNMHKKRDNSLQHGFMRFSPLDDCSVYYHGC
HLNGKSTHYHCMQVGCNKVYTSTSDVMTHENFHKKNTQLINDGFQRFRATEDCGTADC
QFYGQKTTHFHCRRPGCTFTFKNKCDIEKHKSYHIKDDAYAKDGFKKFYKYEECKYEG
CVYSKATNHFHCIRAGCGFTFTSTSQMTSHKRKHERRHIRSSGALGLPPSLLGAKDTE
HEESSNDDLVDFSALSSKNSSLSASPTSQQSSASLAAATAATEAGPSATKPPNSKISG
LLPQGLPGSIPLALALSNSGLPTPTPYFPILAGRGSTSLPVGTPSLLGAVSSGSAASA
TPDTPTLVASGAGDSAPVAAASVPAPPASIMERISASKGLISPMMARLAAAALKPSAT
LDPGEQAGSCPESRHLLDWGGHLASGCRAESGGVWKKCPCGPCLPAPPLCLIFAPILL
VSMWGPWFWLPTVGGPCFCFPICELGAMVPASSAALHPWGHCRSPLPVCSPSHIPSPP
"
BASE COUNT 675 a 1122 c 924 g 530 t
ORIGIN
1 aaaactgtta ccctgagtgt taccggcagg agcaatgaca tcagggcttt aaaacaactt
61 gttattcggg gagtaatcag ttgcaattag gcattaatta agtattatga aagttgatta
121 tttaagtgaa ttcggctttc gactctccga ctatgagttt gggaccaagg agaagagaat
181 ggatcttgga acagctgagg gcacccggtg cacggacccg cctgcaggca agcccgccat
241 ggcgcccaaa cgcaagggtg gcctgaagct gaacgccatc tgcgccaagc tgagccgcca
301 ggtggtggtg gagaagcgag ctgatgccgg ctcccacacg gagggcagcc catcgcagcc
361 ccgggaccaa gagcgcagtg gccctgagtc tggggcagcc cgggcccccc gcagcgagga
421 agacaagaga cgggcagtgg tcgagaagtg ggtgaacggg gagtacagcg aggagccggc
481 acccacaccc gtgttggggc ggattgcccg cgagggcctg gagctgcctc ccgagggtgt
541 ctacatggtg cagccccagg ggtgcagcga tgaggaagac cacgcggagg agccctccaa
601 ggacggcggt gccctggagg agaaggattc ggacggggca gcctccaagg aggacagcgg
661 ccccagcacc aggcaggctt caggagaggc ctcctcgctg cgggactacg cggcctccac
721 catgaccgag ttcctcggca tgtttggcta tgatgaccag aacacgcggg acgagctggc
781 caggaagatc agctttgaga agctgcacgc gggctccacc ccggaggcag ccacctcctc
841 catgctgccc acctccgagg ataccctcag caagcgggcg cggttctcta agtatgagga
901 gtacatccgc aagctcaagg ctggcgagca gctctcctgg ccggccccca gcaccaagac
961 cgaggagcgg gtgggcaagg aggtggtggg caccctgccc ggcctgcggc tgcccagcag
1021 cacggcccac ctggagacca aggccaccat cctgcccctg ccgtcgcaca gcagtgtcca
1081 gatgcagaac ctggtagccc gggcctccaa gtacgacttc ttcatccaga aactgaagac
1141 cggcgagaat ctgcggcccc agaacgggag cacctacaag aagccatcca agtacgacct
1201 ggagaatgtc aagtacctgc acctcttcaa acccggggag ggcagccccg acatgggcgg
1261 ggccatcgcc ttcaagacag gcaaggtggg gcgcccttcc aagtacgacg tccggggcat
1321 ccagaagcca ggccccgcca aggttccgcc cacccccagc ctggctcccg cacccctcgc
1381 cagcgtgccc agtgccccca gcgcccccgg gccagggcca gagcctcctg cctccctgtc
1441 cttcaacact cccgagtacc tgaagtcaac cttctccaaa acagactcca tcaccacggg
1501 gaccgtctcc actgtcaaga acggactgcc cacagataag ccagccgtca ctgaagatgt
1561 aaacatttac cagaaatata ttgccaggtt ctcgggcagc cagcactgtg gccacatcca
1621 ctgtgcctac cagtaccgcg agcactacca ctgccttgac cctgagtgta actaccagag
1681 gttcacgagt aagcaggacg tgatccgcca ctacaacatg cacaagaagc gcgacaactc
1741 cctgcagcac ggcttcatgc gtttcagccc gctggacgac tgcagcgtct actaccacgg
1801 ctgccacctc aatgggaaga gcacccacta tcactgcatg caggtgggct gtaacaaggt
1861 gtacacgagc acgtctgacg tgatgaccca cgagaacttc cacaagaaga atacccagct
1921 cattaacgac ggcttccagc gcttccgagc caccgaagac tgtggcacag ccgactgcca
1981 gttctacgga cagaagacca cgcacttcca ctgcaggcgc cccggctgca cattcacttt
2041 caagaacaag tgtgacatcg agaagcacaa gagctaccac atcaaggacg atgcctacgc
2101 caaggacggc ttcaagaagt tctacaagta cgaggagtgc aagtacgagg gctgcgtgta
2161 cagcaaggct accaaccact tccactgcat ccgcgccggc tgcggcttca ccttcacctc
2221 caccagccag atgacctctc acaagcgcaa gcatgagcgc cggcacatcc gctcctcggg
2281 cgcgctgggg ctgccgccct cgctgctggg cgccaaggac acggagcacg aggagtccag
2341 caacgacgac cttgttgact tctccgccct gagcagcaag aactccagcc tgagcgcctc
2401 ccctaccagc cagcagtcct ctgcgtccct ggctgccgcc actgccgcca ccgaggctgg
2461 gcccagtgcc accaaacctc ccaacagcaa gatctcgggg ctgctgcccc agggcctgcc
2521 tggctcgatc cccctggccc tggccctctc caactcgggc ctgcccaccc ccacgcccta
2581 cttccccata ctggctggcc gtgggagcac ctccctgcct gtgggcaccc ccagcctcct
2641 gggtgccgtg tcgtctgggt cagcagcctc agccacccct gacacaccca cgctggtcgc
2701 ctcgggagct ggagactcag cccccgtggc tgccgcctct gtcccggcac cacccgcctc
2761 catcatggag aggatctctg caagcaaggg cctcatctcg cccatgatgg ccaggctggc
2821 tgcagctgcc ctcaagccct ctgccaccct tgacccaggt gagcaggctg ggtcctgccc
2881 agaaagcagg caccttctgg actggggtgg ccacctggcc tcaggctgca gagcagagtc
2941 ggggggtgtt tggaagaagt gtccgtgtgg cccctgcttg ccagcacccc ctctttgcct
3001 gatcttcgcc cccatcctgt tggtttctat gtggggcccc tggttctggc tccccacagt
3061 aggggggcca tgcttctgtt tccccatctg tgagctgggg gcgatggtcc ctgcctcctc
3121 ggctgccctg catccctggg gccactgcag gtcccccctc cctgtctgct caccctccca
3181 catcccaagt ccaccctgat aagagcaggc ccagggcccc tggcgtgccg agcgtttcct
3241 ccagctgacc t
//