LOCUS AK293464 1885 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ53824 complete cds, highly similar to Sorting
nexin-17.
ACCESSION AK293464
VERSION AK293464.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1885)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1885
/clone="BRACE2002299"
/clone_lib="BRACE2"
/db_xref="H-InvDB:HIT000488088"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="cerebellum"
CDS 155..1477
/codon_start=1
/note="highly similar to Sorting nexin-17"
/protein_id="BAG56959.1"
/transl_table=1
/translation="MHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQ
RREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVN
VLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVT
SLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLK
SLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQ
QLREGSFRVTRMRCWRVTSSVPLPSGSTSSPGRGRGEVRLELAFEYLMSKDRLQWVTI
TSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESP
DATRESMVKLSSKLSAVSLRGIGSPSTDASASDVHGNFAFEGIGDEDL"
BASE COUNT 397 a 507 c 554 g 427 t
ORIGIN
1 agaaccgacg tcccaccgcc ttcccacatc ggatcgcagg gctcccaaaa tggcgagtga
61 ggctgcgggg actcgctgag cagcggaggg ggagcgtgca gagccgctgc ggccctcacg
121 gtccggagcc cggccgtgcc gtgccgtagg gaacatgcac tgtcgggtgc gctacagcca
181 gctcctgggg ctgcacgagc agcttcggaa ggagtatggg gccaatgtgc ttcctgcatt
241 ccccccaaag aagcttttct ctctgactcc tgctgaggta gaacagagga gagagcagtt
301 agagaagtac atgcaagctg ttcggcaaga cccattgctt gggagcagcg agactttcaa
361 cagtttcctg cgtcgggcac aacaggagac acagcaggtc cccacagagg aagtgtcctt
421 ggaagtgctg ctcagcaacg ggcagaaagt tctggtcaac gtgctaactt cagatcagac
481 tgaggatgtc ctggaggctg tagctgcaaa gctggatctt ccagatgact tgattggata
541 ctttagtcta ttcttagttc gagaaaaaga ggatggagcc ttttcttttg tacggaagtt
601 gcaagagttt gagctgcctt atgtgtctgt caccagcctt cggagtcaag agtataagat
661 tgtgctaagg aagagttatt gggactctgc ctatgatgac gatgtcatgg agaaccgagt
721 tggcctgaac ctgctttatg ctcagacggt atcagatatt gagcgtgggt ggatcttggt
781 caccaaggaa cagcaccggc aactcaaatc tctgcaagag aaagtctcca agaaggagtt
841 cctgaggctg gcccagacgc tgcggcacta tggctacttg cgctttgatg cctgtgtggc
901 tgacttccca gaaaaggact gtcctgtggt ggtgagcgcg ggcaacagtg agctcagcct
961 gcagctccgc ctgcctggcc agcaactccg agaaggctcc ttccgggtca cccgcatgcg
1021 atgctggcgg gtcacctcct ctgtaccatt gcccagtgga agcacgagca gcccaggccg
1081 gggccggggt gaggtgcgcc tggaactggc ttttgaatac ctcatgagca aggaccggct
1141 acagtgggtc accatcacta gcccccaggc tatcatgatg agcatctgct tgcagtccat
1201 ggttgatgaa ctgatggtga agaaatctgg cggcagtatc aggaagatgc tgcgccggcg
1261 ggtggggggt actctgagac gctcagacag ccagcaagca gtgaagtccc caccactgct
1321 tgagtcacct gatgccaccc gggagtctat ggtcaaactc tcaagtaagc tgagtgccgt
1381 gagcttgcgg ggaattggca gtcccagcac agatgccagt gccagtgatg tccacggcaa
1441 tttcgccttc gagggcattg gagatgagga tctgtaatct ccactgcttg gatgtctgcc
1501 ctctacccca gaggaattta cagaaacttg ccctgtgcct gtgtccccca tgctaggggc
1561 ggaggggtct tttccttctt ctttcctacc tacccccttt ctcttggcca ggggcctcgt
1621 atcctacctt tccttgtccc ctgggctggc tgcacagagg attgcccctt ctcttttcag
1681 agctggccct cgatgccaaa ttagcattta gtattttgca caaagtctaa gggaccatgg
1741 ctgcctgcct tggggaggaa ccatatctcc ctctgggccg cttctggcct cttggagcca
1801 tgggccaaag gccaagggga tgggcagagg tctgtgtttg gtctggccca gttccccatc
1861 attaaactca gcctgactgc tgcct
//