LOCUS AK293271 1629 bp mRNA linear HUM 24-JUL-2008
DEFINITION Homo sapiens cDNA FLJ60412 complete cds, highly similar to
Leucine-rich repeat protein SHOC-2.
ACCESSION AK293271
VERSION AK293271.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1629)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project focused on splicing variants
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1629
/cell_type="normal astrocytes (NHA5732)"
/clone="ASTRO2009800"
/clone_lib="ASTRO2"
/db_xref="H-InvDB:HIT000487895"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="primary culture, normal astrocytes"
/organism="Homo sapiens"
CDS 435..1100
/codon_start=1
/note="highly similar to Leucine-rich repeat protein
SHOC-2"
/protein_id="BAG56800.1"
/transl_table=1
/translation="MEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMV
ELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESL
PNEIAYFKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEE
LYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYR
AMV"
BASE COUNT 486 a 306 c 306 g 531 t
ORIGIN
1 gaagaggagg aaggagggcg agcgaggagg atggcggagt cgggtctcct gacggtgaat
61 tatgtaacct cattacgctg gatgtagctc acaatcaact tgaacacctt ccaaaggaga
121 ttggaaactg tacacagata accaaccttg acttgcagca caatgaactg ctagacctcc
181 cagatactat aggaaacctg tccagtttaa gtcgtcttgg tctgagatat aacagactgt
241 cagcaatacc cagatcatta gcaaaatgca gtgcacttga agaattaaat ttagagaaca
301 ataacatttc tactttacca gagagtcttt tatcaagtct tgtgaaactg aatagtttga
361 ccttagctag aaattgcttc cagttgtatc cagtgggtgg tccatctcag ttttctacca
421 tctattccct caacatggaa cacaatcgaa tcaacaaaat tccatttgga attttctcca
481 gagcaaaagt attaagtaag ctgaatatga aggacaatca gttaacatca cttcccttgg
541 attttggaac ttggaccagt atggtagaat tgaatttagc cactaatcag ctcacaaaga
601 tccctgagga tgtgtctggt ctcgtttctc ttgaggttct tatcttatca aacaatcttc
661 taaagaagct tccccatggt cttggaaacc ttaggaagtt aagagagttg gatctagaag
721 agaacaaatt ggaatccttg ccaaatgaaa ttgcatattt taaggattta cagaaattag
781 tcttgacaaa caaccagttg accactcttc ccagaggcat tggtcacctt actaatctca
841 cacatctggg ccttggagag aacctactta ctcaccttcc tgaagaaatt ggtacactgg
901 agaacctaga agaactgtat ttgaatgaca accccaacct gcatagcctt ccctttgagc
961 tggcactctg cagcaagctt tcaatcatga gtattgagaa ctgtccactc agtcaccttc
1021 cacctcagat tgttgctggg gggccttctt tcatcattca gttcttaaag atgcagggtc
1081 catatcgtgc catggtctga tataaatctg ctggtcccac acactgttca aaaatagact
1141 gccattaatg tttcttatct atatctgtat ctatttatat agatattggt atatggcaga
1201 tttatgaaaa ttgcattatg tgtttctgct aatagaggaa tcatagccat ttagaatttt
1261 ttttaaattc tgtacaaaag gcttatataa gttttctttg ctgaatttga tggatgtttt
1321 tctgttgtgt aatctgatat gccagtttgc ttaaaacatt tgccaacaca ttatgaagtt
1381 attaaattta agggacagag gtagtatagt tagatatact ttctcttagg aaaaataatg
1441 ggcaaaaatt tttgttgcaa cttttcatat atattttccc cttaccaatt gttttatcct
1501 tatagtattg taggccctga aagtagaatt tttctttaac ttattttgag atttgagatt
1561 taaattttat gtattgttta cagtcagagt aaatcactgg atttcttttg tttgttttga
1621 tttgctctg
//