LOCUS AK293118 2747 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76489 complete cds, highly similar to Homo
sapiens sortilin 1 (SORT1), mRNA.
ACCESSION AK293118
VERSION AK293118.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2747)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2747
/cell_line="Y79"
/cell_type="retinoblastoma"
/clone="Y79AA1001791"
/clone_lib="Y79AA1"
/db_xref="H-InvDB:HIT000425915"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
CDS 12..2507
/codon_start=1
/note="highly similar to Homo sapiens sortilin 1 (SORT1),
mRNA"
/protein_id="BAF85807.1"
/transl_table=1
/translation="MERPWGAADGLSRWPHGLGLLLLLQLLPPSTLSPDRLDAPPPPA
APLPRWSGPIGVSWGLRAAAAGGAFPRGGRWRRSAPGEDEECGRVRDFVAKLANNTHQ
HVFDDLRGSVSLSWVGDSTGVILVLTTFHVPLVIMTFGQSKLYRSEDYGKNFKDITDL
INNTFIRTEFGMAIGPENSGKVVLTAEVSGGSRGGRIFRSSDFAKNFVQTDLPFHPLT
QMMYSPQNSDYLLALSTENGLWVSKNFGGKWEEIHKAVCLAKWGSDNTIFFTTYANGS
CKADLGALELWRTSDLGKSFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQG
DTWSMAQLPSVGQEQFYSILAANDDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDR
HLYTTTGGETDFTNVTSLRGVYITSVLSEDNSIQTMITFDQGGRWTHLRKPENSECDA
TAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHGSVGDAISVMVSDVYIS
DDGGYSWTKMLEGPHYYTILDSGGIIVAIEHSSRPINVIKFSTDEGQCWQTYTFTRDP
IYFTGLASEPGARSMNISIWGFTESFLTSQWVSYTIDFKDILERNCEEKDYTIWLAHS
TDPEDYEDGCILGYKEQFLRLRKSSVCQNGRDYVVTKQPSICLCPLEDFLCDFGYYRP
ENDSKCVEQPELKGHDLEFCLYGREEHLTTNGYRKIPGDKCQGGVNPVREVKDLKKKC
TSNFLSPEKQNSKSNSVPIILAIVGLMLVTVVAGVLIVKKYVCGGRFLVHRYSVLQQH
AEANGVDGVDALDTASHTNKSGYHDDSDEDLLE"
BASE COUNT 699 a 667 c 716 g 665 t
ORIGIN
1 attcggcggc gatggagcgg ccctggggag ctgcggacgg cctctcgcgc tggccccatg
61 gcctcggcct cctcctcctc ctgcagctgc tgccgccgtc gaccctcagc ccggaccggc
121 tggacgcgcc gccgccgccc gctgcgccgc tgccgcgctg gtctggcccc atcggggtga
181 gctgggggct gcgggcggcc gcagccgggg gcgcgtttcc ccgcggcggc cgttggcgtc
241 gcagcgcgcc gggcgaggac gaggagtgcg gccgggtccg ggacttcgtc gccaagctgg
301 ccaacaacac gcaccagcat gtgtttgatg atctcagagg ctcagtatcc ttgtcctggg
361 ttggagatag cactggggtc attctagtct tgactacctt ccatgtacca ctggtaatta
421 tgacttttgg acagtccaag ctatatcgaa gtgaggatta tgggaagaac tttaaggata
481 ttacagatct catcaataac acctttattc ggactgaatt tggcatggct attggtcctg
541 agaactctgg aaaggtggtg ttaacagcag aggtgtctgg aggaagtcgt ggaggaagaa
601 tcttcagatc atcagatttt gcgaagaatt ttgtgcaaac agatctccct tttcatcctc
661 tcactcagat gatgtatagc cctcagaatt ctgattatct tttagctctc agcactgaaa
721 atggcctgtg ggtgtccaag aattttgggg gaaaatggga agaaatccac aaagcagtat
781 gtttggccaa atggggatca gacaacacca tcttctttac aacctatgca aatggctcct
841 gcaaagctga ccttggggct ctggaattat ggagaacttc agacttggga aaaagcttca
901 aaactattgg tgtgaaaatc tactcatttg gtcttggggg acgtttcctt tttgcctctg
961 tgatggctga taaggatacc acaagaagga tccacgtttc aacagatcaa ggggacacat
1021 ggagcatggc ccagctcccc tccgtgggac aggaacagtt ctattctatt ctggcagcaa
1081 atgatgacat ggtattcatg catgtagatg aacctggaga cactgggttt ggcacaatct
1141 ttacctcaga tgatcgaggc attgtctatt ccaagtcttt ggaccgacat ctctacacta
1201 ccacaggcgg agagacggac tttaccaacg tgacctccct ccgcggcgtc tacataacaa
1261 gcgtgctctc cgaagataat tctatccaga ccatgatcac ttttgaccaa ggaggaaggt
1321 ggacgcacct gaggaagcct gaaaacagtg aatgtgatgc tacagcaaaa aacaagaatg
1381 agtgcagcct tcatattcat gcttcctaca gcatctccca gaaactgaat gttccaatgg
1441 ccccactctc agagccgaat gccgtaggca ttgtcattgc tcatggtagc gtgggggatg
1501 ccatctcagt gatggtttca gatgtgtaca tctcagatga tgggggttac tcctggacaa
1561 agatgctgga aggaccccac tattacacca tcctggattc tggaggcatc attgtggcca
1621 ttgagcacag cagccgtcct atcaatgtga ttaagttctc cacagacgaa ggtcaatgct
1681 ggcaaaccta cacgttcacc agggacccca tctatttcac tggcctagct tcagaacctg
1741 gagctaggtc catgaatatc agcatttggg gcttcacaga atctttcctg accagccagt
1801 gggtctccta caccattgat tttaaagata tccttgaaag gaactgtgaa gagaaggact
1861 ataccatatg gctggcacac tccacagacc ctgaagatta tgaagatggc tgcattttgg
1921 gctacaaaga acagtttctg cggctacgca agtcatccgt gtgtcagaat ggtcgagact
1981 atgttgtgac caagcagccc tccatctgcc tctgtcccct ggaggacttt ctctgtgatt
2041 ttggctacta ccgtccagaa aatgactcca agtgtgtgga acagccagaa ctgaagggcc
2101 acgacctgga gttttgtctg tacggaagag aagaacacct aacaacaaat gggtaccgga
2161 aaattccagg ggacaaatgc cagggtgggg taaatccagt tcgagaagta aaagacttga
2221 aaaagaaatg cacaagcaac tttttgagtc cggaaaaaca gaattccaag tcaaattctg
2281 ttccaattat cctggccatc gtgggattga tgctggtcac agtcgtagca ggagtgctca
2341 ttgtgaagaa atatgtctgt gggggaaggt tcctggtgca tcgatactct gtgctgcagc
2401 agcatgcaga ggccaatggt gtggatggtg tggatgcttt ggacacagcc tcccacacta
2461 ataaaagtgg ttatcatgat gactcagatg aggacctctt ggaatagctc ttcagaggag
2521 ctggacccag catggatggt ggaaccacag tacctcttac actccctgtg gctccaactt
2581 caggaaataa atttcccatt gcgagggacc cagctctgtt tctgctgctt ccatcaaagc
2641 caaaaggacc tacactaaag aaatgcaggg tgggggtggg gaaccctgag cactttttta
2701 caattggctc tgagaaaaag ggagacattt taaattcttt aacttct
//