LOCUS AK293068 2726 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77223 complete cds, highly similar to Homo
sapiens toll-like receptor 4 (TLR4), transcript variant 1, mRNA.
ACCESSION AK293068
VERSION AK293068.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2726)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2726
/clone="UTERU3002364"
/clone_lib="UTERU3"
/db_xref="H-InvDB:HIT000425865"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="uterus"
CDS 130..2649
/codon_start=1
/note="highly similar to Homo sapiens toll-like receptor
4 (TLR4), transcript variant 1, mRNA"
/protein_id="BAF85757.1"
/transl_table=1
/translation="MMSASRLAGTLIPAMAFLSCVRPESWEPCVEVVPNITYQCMELN
FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS
HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN
LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI
QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA
LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQH
LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS
QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI
YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL
EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH
FPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN
ITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLLAGCIKYGRGENIYDAFVIYSS
QDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANIIHEGFHKSRKVIVVVSQH
FIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLRQQVELYRLLSRNTYLEWE
DSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATSI"
BASE COUNT 753 a 598 c 585 g 790 t
ORIGIN
1 aattgctgtg gggcggctcg aggaagagaa gacaccagtg cctcagaaac tgctcggtca
61 gacggtgata gcgagccacg cattcacagg gccactgctg ctcacagaag cagtgaggat
121 gatgccagga tgatgtctgc ctcgcgcctg gctgggactc tgatcccagc catggccttc
181 ctctcctgcg ttagaccaga aagctgggag ccctgcgtgg aggtggttcc taatattact
241 tatcaatgca tggagctgaa tttctacaaa atccccgaca acctcccctt ctcaaccaag
301 aacctggacc tgagctttaa tcccctgagg catttaggca gctatagctt cttcagtttc
361 ccagaactgc aggtgctgga tttatccagg tgtgaaatcc agacaattga agatggggca
421 tatcagagcc taagccacct ctctacctta atattgacag gaaaccccat ccagagttta
481 gccctgggag ccttttctgg actatcaagt ttacagaagc tggtggctgt ggagacaaat
541 ctagcatctc tagagaactt ccccattgga catctcaaaa ctttgaaaga acttaatgtg
601 gctcacaatc ttatccaatc tttcaaatta cctgagtatt tttctaatct gaccaatcta
661 gagcacttgg acctttccag caacaagatt caaagtattt attgcacaga cttgcgggtt
721 ctacatcaaa tgcccctact caatctctct ttagacctgt ccctgaaccc tatgaacttt
781 atccaaccag gtgcatttaa agaaattagg cttcataagc tgactttaag aaataatttt
841 gatagtttaa atgtaatgaa aacttgtatt caaggtctgg ctggtttaga agtccatcgt
901 ttggttctgg gagaatttag aaatgaagga aacttggaaa agtttgacaa atctgctcta
961 gagggcctgt gcaatttgac cattgaagaa ttccgattag catacttaga ctactacctc
1021 gatgatatta ttgacttatt taattgtttg acaaatgttt cttcattttc cctggtgagt
1081 gtgactattg aaagggtaaa agacttttct tataatttcg gatggcaaca tttagaatta
1141 gttaactgta aatttggaca gtttcccaca ttgaaactca aatctctcaa aaggcttact
1201 ttcacttcca acaaaggtgg gaatgctttt tcagaagttg atctaccaag ccttgagttt
1261 ctagatctca gtagaaatgg cttgagtttc aaaggttgct gttctcaaag tgattttggg
1321 acaaccagcc taaagtattt agatctgagc ttcaatggtg ttattaccat gagttcaaac
1381 ttcttgggct tagaacaact agaacatctg gatttccagc attccaattt gaaacaaatg
1441 agtgagtttt cagtattcct atcactcaga aacctcattt accttgacat ttctcatact
1501 cacaccagag ttgctttcaa tggcatcttc aatggcttgt ccagtctcga agtcttgaaa
1561 atggctggca attctttcca ggaaaacttc cttccagata tcttcacaga gctgagaaac
1621 ttgaccttcc tggacctctc tcagtgtcaa ctggagcagt tgtctccaac agcatttaac
1681 tcactctcca gtcttcaggt actaaatatg agccacaaca acttcttttc attggatacg
1741 tttccttata agtgtctgaa ctccctccag gttcttgatt acagtctcaa tcacataatg
1801 acttccaaaa aacaggaact acagcatttt ccaagtagtc tagctttctt aaatcttact
1861 cagaatgact ttgcttgtac ttgtgaacac cagagtttcc tgcaatggat caaggaccag
1921 aggcagctct tggtggaagt tgaacgaatg gaatgtgcaa caccttcaga taagcagggc
1981 atgcctgtgc tgagtttgaa tatcacctgt cagatgaata agaccatcat tggtgtgtcg
2041 gtcctcagtg tgcttgtagt atctgttgta gcagttctgg tctataagtt ctattttcac
2101 ctgatgcttc ttgctggctg cataaagtat ggtagaggtg aaaacatcta tgatgccttt
2161 gttatctact caagccagga tgaggactgg gtaaggaatg agctagtaaa gaatttagaa
2221 gaaggggtgc ctccatttca gctctgcctt cactacagag actttattcc cggtgtggcc
2281 attgctgcca acatcatcca tgaaggtttc cataaaagcc gaaaggtgat tgttgtggtg
2341 tcccagcact tcatccagag ccgctggtgt atctttgaat atgagattgc tcagacctgg
2401 cagtttctga gcagtcgtgc tggtatcatc ttcattgtcc tgcagaaggt ggagaagacc
2461 ctgctcaggc agcaggtgga gctgtaccgc cttctcagca ggaacactta cctggagtgg
2521 gaggacagtg tcctggggcg gcacatcttc tggagacgac tcagaaaagc cctgctggat
2581 ggtaaatcat ggaatccaga aggaacagtg ggtacaggat gcaattggca ggaagcaaca
2641 tctatctgaa gaggaaaaat aaaaacctcc tgaggcattt cttgcccagc tgggtccaac
2701 acttgttcag ttaataagta ttaaat
//