LOCUS AK292668 2936 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77198 complete cds, highly similar to Homo
sapiens NACHT, leucine rich repeat and PYD containing 6 (NALP6),
mRNA.
ACCESSION AK292668
VERSION AK292668.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2936)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2936
/clone="THYMU3007198"
/clone_lib="THYMU3"
/db_xref="H-InvDB:HIT000425465"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thymus"
CDS 206..2881
/codon_start=1
/note="highly similar to Homo sapiens NACHT, leucine rich
repeat and PYD containing 6 (NALP6), mRNA"
/protein_id="BAF85357.1"
/transl_table=1
/translation="MDQPEAPCSSTGPRLAVARELLLAALEELSQEQLKRFRHKLRDV
GPDGRSIPWGRLERADAVDLAEQLAQFYGPEPALEVARKTLKRADARDVAAQLQERRL
QRLGLGSGTLLSVSEYKKKYREHVLQLHARVKERNARSVKITKRFTKLLIAPESAAPE
EALGPAEEPEPGRARRSDTHTFNRLFRRDEEGRRPLTVVLQGPAGIGKTMAAKKILYD
WAAGKLYQGQVDFAFFMPCGELLERPGTRSLADLILDQCPDRGAPVPQMLAQPQRLLF
ILDGADELPALGGPEAAPCTDPFEAASGARVLGGLLSKALLPTALLLVTTRAAAPGRL
QGRLCSPQCAEVRGFSDKDKKKYFYKFFRDERRAERAYRFVKENETLFALCFVPFVCW
IVCTVLRQQLELGRDLSRTSKTTTSVYLLFITSVLSSAPVADGPRLQGDLRNLCRLAR
EGVLGRRAQFAEKELEQLELRGSKVQTLFLSKKELPGVLETEVTYQFIDQSFQEFLAA
LSYLLEDGGVPRTAAGGVGTLLRGDAQPHSHLVLTTRFLFGLLSAERMRDIERHFGCM
VSERVKQEALRWVQGQGQGCPGVAPEVTEGAKGLEDTEEPEEEEEGEEPNYPLELLYC
LYETQEDAFVRQALCRFPELALQRVRFCRMDVAVLSYCVRCCPAGQALRLISCRLVAA
QEKKKKSLGKRLQASLGGGSSQGTTKQLPASLLHPLFQAMTDPLCHLSSLTLSHCKLP
DAVCRDLSEALRAAPALTELGLLHNRLSEAGLRMLSEGLAWPQCRVQTVRVQLPDPQR
GLQYLVGMLRQSPALTTLDLSGCQLPAPMVTYLCAVLQHQGCGLQTLSLASVELSEQS
LQELQAVKRAKPDLVITHPALDGHPQPPKELISTF"
BASE COUNT 514 a 954 c 1015 g 453 t
ORIGIN
1 aaacggagcc cttaaagggc aatgctctgc gtgtgccacg gtgcccaaca gcatctcgtg
61 ccagctgagc tgcggtgtgt ggacccgggg aatggaccgg gctggacaac ctctaagact
121 tggctccagc tcagcctgtg aaggaatcac ctctctgatc cccacctctg ccccggagtg
181 ctagacccag ggaggaagag accccatgga ccagccagag gccccctgct ccagcacggg
241 gccgcgcctc gcggtggccc gcgagctgct cctggctgcg ctggaggaac tgagccaaga
301 gcagctgaag cgcttccgcc acaagctgcg cgacgtgggc ccggacggac gcagcatccc
361 gtgggggcgg ctggagcgcg cggacgccgt ggacctcgcg gagcagctgg cccagttcta
421 cggcccggag cctgccctgg aggtggcccg caagaccctc aagagggcgg acgcgcgcga
481 cgtggcggcg cagctccagg agcggcggct gcagcggctc gggctcggct ccgggacgct
541 gctctccgtg tccgagtaca agaagaagta ccgggagcac gtgctgcagc tgcacgctcg
601 ggtgaaggag aggaacgccc gctccgtgaa gatcaccaag cgcttcacca agctgctcat
661 cgcgcccgag agcgccgccc cggaggaggc gctggggccc gcggaagagc ctgagccggg
721 gcgcgcgcgg cgctcggaca cgcacacttt caaccgcctc ttccgccgcg acgaggaggg
781 ccggcggccg ctgaccgtgg tgctgcaggg cccggcgggc atcggcaaga ccatggcggc
841 caaaaagatc ctgtacgact gggcggcggg caagctgtac cagggccagg tggacttcgc
901 cttcttcatg ccctgcggcg agctgctgga gaggccgggc acgcgcagcc tggctgacct
961 gatcctggac cagtgccccg accgcggcgc gccggtgccg cagatgctgg cccagccgca
1021 gcggctgctc ttcatcctgg acggcgcgga cgagctgccg gcgctggggg gccccgaggc
1081 cgcgccctgc acagacccct tcgaggcggc gagcggcgcg cgggtgctag gcgggctgct
1141 gagtaaggcg ctgctgccca cggccctcct gctggtgacc acgcgcgccg ccgcccccgg
1201 gaggctgcag ggccgcctgt gttccccgca gtgcgccgag gtgcgcggct tctccgacaa
1261 ggacaagaag aagtatttct acaagttctt ccgggatgag aggagggccg agcgcgccta
1321 ccgcttcgtg aaggagaacg agacgctgtt cgcgctgtgc ttcgtgccct tcgtgtgctg
1381 gatcgtgtgc accgtgctgc gccagcagct ggagctcggt cgggacctgt cgcgcacgtc
1441 caagaccacc acgtcagtgt acctgctttt catcaccagc gttctgagct cggctccggt
1501 agccgacggg ccccggttgc agggcgacct gcgcaatctg tgccgcctgg cccgcgaggg
1561 cgtcctcgga cgcagggcgc agtttgccga gaaggaactg gagcaactgg agcttcgtgg
1621 ctccaaagtg cagacgctgt ttctcagcaa aaaggagctg ccgggcgtgc tggagacaga
1681 ggtcacctac cagttcatcg accagagctt ccaggagttc ctcgcggcac tgtcctacct
1741 gctggaggac ggcggggtgc ccaggaccgc ggctggcggc gttgggacac tcctgcgtgg
1801 ggacgcccag ccgcacagcc acttggtgct caccacgcgc ttcctcttcg gactgctgag
1861 cgcggagcgg atgcgcgaca tcgagcgcca cttcggctgc atggtttcag agcgtgtgaa
1921 gcaggaggcc ctgcggtggg tgcagggaca gggacagggc tgccccggag tggcaccaga
1981 ggtgaccgag ggggccaaag ggctcgagga caccgaagag ccagaggagg aggaggaggg
2041 agaggagccc aactacccac tggagttgct gtactgcctg tacgagacgc aggaggacgc
2101 gtttgtgcgc caagccctgt gccggttccc ggagctggcg ctgcagcgag tgcgcttctg
2161 ccgcatggac gtggctgttc tgagctactg cgtgaggtgc tgccctgctg gacaggcact
2221 gcggctgatc agctgcagat tggttgctgc gcaggagaag aagaagaaga gcctggggaa
2281 gcggctccag gccagcctgg gtggcggcag ttctcaaggc accacaaaac aactgccagc
2341 ctcccttctt catccactct ttcaggcaat gactgaccca ctgtgccatc tgagcagcct
2401 cacgctgtcc cactgcaaac tccctgacgc ggtctgccga gacctttctg aggccctgag
2461 ggcagccccc gcactgacgg agctgggcct cctccacaac aggctcagtg aggcgggact
2521 gcgtatgctg agtgagggcc tagcctggcc gcagtgcagg gtgcagacgg tcagggtaca
2581 gctgcctgac ccccagcgag ggctccagta cctggtgggt atgcttcggc agagccccgc
2641 cctgaccacc ctggatctca gcggctgcca actgcccgcc cccatggtga cctacctgtg
2701 tgcagtcctg cagcaccagg gatgcggcct gcagaccctc agtctggcct ctgtggagct
2761 gagcgagcag tcactacagg agcttcaggc tgtgaagaga gcaaagccgg atctggtcat
2821 cacacaccca gcgctggacg gccacccaca acctcccaag gaactcatct cgaccttctg
2881 aggctctggt ggccagagca gggtggaaga ccctagtcaa agtccctgtg gagaga
//