LOCUS AK292421 3730 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78755 complete cds, highly similar to Homo
sapiens SMC6 structural maintenance of chromosomes 6-like
1(SMC6L1), mRNA.
ACCESSION AK292421
VERSION AK292421.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3730)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3730
/clone="TESTI4005897"
/clone_lib="TESTI4"
/db_xref="H-InvDB:HIT000425218"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 403..3678
/codon_start=1
/note="highly similar to Homo sapiens SMC6 structural
maintenance of chromosomes 6-like 1(SMC6L1), mRNA"
/protein_id="BAF85110.1"
/transl_table=1
/translation="MAKRKEENFSSPKNAKRPRQEELEDFDKDGDEDECKGTTLTAAE
VGIIESIHLKNFMCHSMLGPFKFGSNVNFVVGNNGSGKSAVLTALIVGLGGRAVATNR
GSSLKGFVKDGQNSADISITLRNRGDDAFKASVYGNSILIQQHISIDGSRSYKLKSAT
GSVVSTRKEELIAILDHFNIQVDNPVSVLTQEMSKQFLQSKNEGDKYKFFMKATQLEQ
MKEDYSYIMETKERTKEQIHQGEERLTELKRQCVEKEERFQSIAGLSTMKTNLESLKH
EMAWAVVNEIEKQLNAIRDNIKIGEDRAARLDRKMEEQQVRLNEAEQKYKDIQDKLEK
ISEETNARAPECMALKADVVAKKRAYNEAEVLYNRSLNEYKALKKDDEQLCKRIEELK
KSTDQSLEPERLERQKKISWLKERVKAFQNQENSVNQEIEQFQQAIEKDKEEHGKIKR
EELDVKHALSYNQRQLKELKDSKTDRLKRFGPNVPALLEAIDDAYRQGHFTYKPVGPL
GACIHLRDPELALAIESCLKGLLQAYCCHNHADERVLQALMKRFYLPGTSRPPIIVSE
FRNEIYDVRHRAAYHPDFPTVLTALEIDNAVVANSLIDMRGIETVLLIKNNSVARAVM
QSQKPPKNCREAFTADGDQVFAGRYYSSENTRPKFLSRDVDSEISDLENEVENKTAQI
LNLQQHLSALEKDIKHNEELLKRCQLHYKELKMKIRKNISEIRELENIEEHQSVDIAT
LEDEAQENKSKMKMVEEHMEQQKENMEHLKSLKIEAENKYDAIKFKINQLSELADPLK
DELNLADSEVDNQKRGKRHYEEKQKEHLDTLNKKKRELDMKEKELEEKMSQARQICPE
RIEVEKSASILDKEINRLRQKIQAEHASHGDREEIMRQYQEARETYLDLDSKVRTLKK
FIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSISVQ
PGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAM
DLILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDPERGQTTLPFRPVTQEEDD
DQR"
BASE COUNT 1336 a 636 c 818 g 940 t
ORIGIN
1 ttagctcaaa atgttctaaa gataaaatct aatgatttct tataggaagg ctaggcttgg
61 tgggcacaag taagaaagcc aagcagagag aagcttcctg gtccttctcc acctttccct
121 ttcctccagt ctggactttg ccttctccac ctccttggaa gacaggctgc tcatcccatt
181 gtggtgtctc ggctggtgta tgttttctgc ctaggcttaa tggacagcac gaggaggtag
241 ggactgacgt tacccatgtt ttacagtgga agaacctgag gcttaaagag atggagtttc
301 gctcttcttg cccaggctag agtgcaatgg cacggtctca gctcactgca acctccgcct
361 cccgggttca agtgattctc ttgtctcagc ctcccaaacc tgatggccaa aagaaaggaa
421 gaaaattttt cctctcctaa aaatgccaaa aggccaagac aagaagaatt ggaggatttt
481 gataaagatg gtgacgaaga cgaatgtaaa ggtactactt tgactgcagc agaagttgga
541 ataattgaga gtattcacct aaaaaacttc atgtgtcatt caatgcttgg accttttaag
601 tttggttcta atgtcaactt tgttgttggc aacaatggaa gtgggaagag tgcagtactc
661 acagctctca tagtcggtct tggtggaaga gcagttgcta ctaatagagg atcctcttta
721 aaaggttttg tgaaagatgg acagaactct gcagatatct caataacatt gaggaacaga
781 ggagatgatg cctttaaagc cagtgtgtat ggtaactcta tacttataca gcaacacatc
841 agcatagatg gaagtcgatc ttataaactt aaaagtgcaa caggctccgt ggtttccacg
901 aggaaagaag agctgattgc aattcttgat cattttaaca tccaggtgga taatccagtt
961 tctgttttaa cacaagaaat gagcaagcag ttcttacagt ctaaaaatga aggagacaaa
1021 tacaaattct tcatgaaagc aacgcaactt gaacagatga aggaagatta ttcatacatt
1081 atggaaacga aagaaagaac aaaggagcag atacatcaag gagaagagcg gcttactgaa
1141 ctaaagcgcc agtgtgtaga gaaagaggaa cgttttcaaa gtattgctgg tttaagtaca
1201 atgaagacta atttagagtc cttgaaacat gaaatggctt gggcagtggt caatgaaatt
1261 gaaaaacaat tgaatgccat cagagataat atcaaaattg gagaagatcg tgctgctaga
1321 cttgacagga aaatggaaga acagcaggtc agacttaatg aggcagaaca aaagtacaag
1381 gatattcaag acaaactaga aaagattagt gaagagacaa atgcacgagc accagaatgt
1441 atggcattga aagcagatgt tgttgctaag aaaagggcct ataatgaagc tgaggtttta
1501 tataaccgat ccttaaacga atataaagca ttaaagaaag atgatgagca gctttgtaaa
1561 cgaattgaag agctgaaaaa aagtactgac caatctttgg aacctgaacg gttggaaaga
1621 caaaaaaaaa tatcttggtt aaaagagaga gtaaaggcct ttcaaaatca agaaaattca
1681 gtcaatcaag agatcgaaca gtttcagcaa gccatagaaa aggacaaaga agaacatggc
1741 aaaattaaga gagaagaatt agatgtgaag catgcactga gctacaatca gaggcaactg
1801 aaagaattga aagatagtaa aactgatcga ctcaaaagat ttggccctaa tgttccagct
1861 cttcttgaag ccatagatga tgcttataga caaggacatt ttacctataa acctgtaggc
1921 cctttaggag cttgcattca tcttcgggac ccagaacttg ctttggctat tgaatcttgc
1981 ttaaaagggc ttctgcaggc ctattgttgc cataatcatg ctgatgaaag ggtccttcag
2041 gcactcatga aaaggtttta tttaccaggg acctcacggc caccgataat agtttctgag
2101 tttcggaatg agatatatga tgtaagacac agagctgctt atcatccaga ctttccaaca
2161 gttctgacag ctttagaaat agataatgcg gttgtggcaa atagcctaat tgacatgaga
2221 ggcatagaga cagtgctact aatcaaaaat aattctgtag ctcgtgcagt aatgcagtcc
2281 caaaagccac ccaaaaattg tagagaagct tttactgctg atggtgatca agtttttgca
2341 ggacgttatt attcatctga aaatacaaga cctaagttcc taagcagaga tgtggattct
2401 gaaataagtg acttggagaa tgaggttgaa aataagacgg cccagatatt aaatcttcag
2461 caacatttat ctgcccttga aaaagatatt aaacacaatg aggaacttct taaaaggtgc
2521 caactacatt ataaagaact aaagatgaaa ataagaaaaa atatttctga aattcgggaa
2581 cttgagaaca tagaagaaca ccagtctgta gatattgcaa ctttggaaga tgaagctcag
2641 gaaaataaaa gcaaaatgaa aatggttgag gaacatatgg agcaacaaaa agaaaatatg
2701 gagcatctta aaagtctgaa aatagaagca gaaaataagt atgatgcaat taaattcaaa
2761 attaatcaac tatcggagct agcagaccca cttaaggatg aattaaacct tgctgattct
2821 gaagtggata accaaaaacg agggaaacga cattatgaag aaaaacaaaa agaacacttg
2881 gataccttaa ataaaaagaa acgagaactg gatatgaaag agaaagaact agaggagaaa
2941 atgtcacaag caagacaaat ctgcccagag cgtatagaag tagaaaaatc tgcatcaatt
3001 ctggacaaag aaattaatcg attaaggcag aagatacagg cagaacatgc tagtcatgga
3061 gatcgagagg aaataatgcg gcagtaccaa gaagcaagag agacctatct tgatctggat
3121 agtaaagtga ggactttaaa aaagtttatt aaattactgg gagaaatcat ggagcacaga
3181 ttcaagacat atcaacaatt tagaaggtgt ttgactttac gatgcaaatt atactttgac
3241 aacttactat ctcagcgggc ctattgtgga aaaatgaatt ttgaccacaa gaatgaaact
3301 ctaagtatat cagttcagcc tggagaagga aataaagctg ctttcaatga catgagagcc
3361 ttgtctggag gtgaacgttc tttctccaca gtgtgtttta ttctttccct gtggtccatc
3421 gcagaatctc ctttcagatg cctggatgaa tttgatgtct acatggatat ggttaatagg
3481 agaattgcca tggacttgat actgaagatg gcagattccc agcgttttag acagtttatc
3541 ttgctcacac ctcaaagcat gagttcactt ccatccagta aactgataag aattctccga
3601 atgtctgatc ctgaaagagg acaaactaca ttgcctttca gacctgtgac tcaagaagaa
3661 gatgatgacc aaaggtgatt tgtaacttaa catgccttgt cctgatgttg aaggatttgt
3721 gaagggaaaa
//