LOCUS AK292419 3884 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ75440 complete cds, highly similar to Homo
sapiens ligase IV, DNA, ATP-dependent (LIG4) gene.
ACCESSION AK292419
VERSION AK292419.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3884)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3884
/clone="TESTI4005499"
/clone_lib="TESTI4"
/db_xref="H-InvDB:HIT000425216"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 263..2797
/codon_start=1
/note="highly similar to Homo sapiens ligase IV, DNA,
ATP-dependent (LIG4) gene"
/protein_id="BAF85108.1"
/transl_table=1
/translation="MRLILPQLERERMAYGIKETMLAKLYIELLNLPRDGKDALKLLN
YRTPTGTHGDAGDFAMIAYFVLKPRCLQKGSLTIQQVNDLLDSIASNNSAKRKDLIKK
SLLQLITQSSALEQKWLIRMIIKDLKLGVSQQTIFSVFHNDAAELHNVTTDLEKVCRQ
LHDPSVGLSDISITLFSAFKPMLAAIADIEHIEKDMKHQSFYIETKLDGERMQMHKDG
DVYKYFSRNGYNYTDQFGASPTEGSLTPFIHNAFKADIQICILDGEMMAYNPNTQTFM
QKGTKFDIKRMVEDSDLQTCYCVFDVLMVNNKKLGHETLRKRYEILSSIFTPIPGRIE
IVQKTQAHTKNEVIDALNEAIDKREEGIMVKQPLSIYKPDKRGEGWLKIKPEYVSGLM
DELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYD
LGLKLAKYWKPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCT
LRFPRIEKIRDDKEWHECMTLDDLEQLRGKASGKLASKHLYIGGDDEPQEKKRKAAPK
MKKVIGIIEHLKAPNLTNVNKISNIFEDVEFCVMSGTDSQPKPDLENRTAEFGGYIVQ
NPGPDTYCVIAGSENIRVKNIILSNKHDVVKPAWLLECFKTKSFVPWQPRFMIHMCPS
TKEHFAREYDCYGDSYFIDTDLNQLKEVFSGIKNSNEQTPEEMASLIADLEYRYSWDC
SPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVII
GEDHSRVADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYLI"
BASE COUNT 1341 a 594 c 768 g 1181 t
ORIGIN
1 agcttccggc ttagcggctg agcttcaggc ttgacgtcag gaaaccatca agatctcatt
61 ttacagctgg gattctctgg ttcacagagg taacggagct tgcccgaggc cagatttgtg
121 ttcaacttta gaacgaatac agaaaagtaa aggacgtgca gaaaaaatca gacacttcag
181 ggaattttta gattcttgga gaaaatttca tgatgctctt cataagaacc acaaagatgt
241 cacagactct ttttatccag caatgagact aattcttcct cagctagaaa gagagagaat
301 ggcctatgga attaaagaaa ctatgcttgc taagctttat attgagttgc ttaatttacc
361 tagagatgga aaagatgccc tcaaactttt aaactacaga acacccactg gaactcatgg
421 agatgctgga gactttgcaa tgattgcata ttttgtgttg aagccaagat gtttacagaa
481 aggaagttta accatacagc aagtaaacga ccttttagac tcaattgcca gcaataattc
541 tgctaaaaga aaagacctaa taaaaaagag ccttcttcaa cttataactc agagttcagc
601 acttgagcaa aagtggctta tacggatgat cataaaggat ttaaagcttg gtgttagtca
661 gcaaactatc ttttctgttt ttcataatga tgctgctgag ttgcataatg tcactacaga
721 tctggaaaaa gtctgtaggc aactgcatga tccttccgta ggactcagtg atatttctat
781 cactttattt tctgcattta aaccaatgct agctgctatt gcagatattg agcacattga
841 gaaggatatg aaacatcaga gtttctacat agaaaccaag ctagatggtg aacgtatgca
901 aatgcacaaa gatggagatg tatataaata cttctctcga aatggatata actacactga
961 tcagtttggt gcttctccta ctgaaggttc tcttacccca ttcattcata atgcattcaa
1021 agcagatata caaatctgta ttcttgatgg tgagatgatg gcctataatc ctaatacaca
1081 aactttcatg caaaagggaa ctaagtttga tattaaaaga atggtagagg attctgatct
1141 gcaaacttgt tattgtgttt ttgatgtatt gatggttaat aataaaaagc tagggcatga
1201 gactctgaga aagaggtatg agattcttag tagtattttt acaccaattc caggtagaat
1261 agaaatagtg cagaaaacac aagctcatac taagaatgaa gtaattgatg cattgaatga
1321 agcaatagat aaaagagaag agggaattat ggtaaaacaa cctctatcca tctacaagcc
1381 agacaaaaga ggtgaagggt ggttaaaaat taaaccagag tatgtcagtg gactaatgga
1441 tgaattggac attttaattg ttggaggata ttggggtaaa ggatcacggg gtggaatgat
1501 gtctcatttt ctgtgtgcag tagcagagaa gccccctcct ggtgagaagc catctgtgtt
1561 tcatactctc tctcgtgttg ggtctggctg caccatgaaa gaactgtatg atctgggttt
1621 gaaattggcc aagtattgga agccttttca tagaaaagct ccaccaagca gcattttatg
1681 tggaacagag aagccagaag tatacattga accttgtaat tctgtcattg ttcagattaa
1741 agcagcagag atcgtaccca gtgatatgta taaaactggc tgcaccttgc gttttccacg
1801 aattgaaaag ataagagatg acaaggagtg gcatgagtgc atgaccctgg acgacctaga
1861 acaacttagg gggaaggcat ctggtaagct cgcatctaaa cacctttata taggtggtga
1921 tgatgaacca caagaaaaaa agcggaaagc tgccccaaag atgaagaaag ttattggaat
1981 tattgagcac ttaaaagcac ctaaccttac taacgttaac aaaatttcta atatatttga
2041 agatgtagag ttttgtgtta tgagtggaac agatagccag ccaaagcctg acctggagaa
2101 cagaactgca gaatttggtg gttatatagt acaaaatcca ggcccagaca cgtactgtgt
2161 aattgcaggg tctgagaaca tcagagtgaa aaacataatt ttgtcaaata aacatgatgt
2221 tgtcaagcct gcatggcttt tagaatgttt taagaccaaa agctttgtac catggcagcc
2281 tcgctttatg attcatatgt gcccatcaac caaagaacat tttgcccgtg aatatgattg
2341 ctatggtgat agttatttca ttgatacaga cttgaaccaa ctgaaggaag tattctcagg
2401 aattaaaaat tctaacgagc agactcctga agaaatggct tctctgattg ctgatttaga
2461 atatcggtat tcctgggatt gctctcctct cagtatgttt cgacgccaca ccgtttattt
2521 ggactcgtat gctgttatta atgacctgag taccaaaaat gaggggacaa ggttagctat
2581 taaagccttg gagcttcggt ttcatggagc aaaagtagtt tcttgtttag ctgagggagt
2641 gtctcatgta ataattgggg aagatcatag tcgtgttgca gattttaaag cttttagaag
2701 aacttttaag agaaagttta aaatcctaaa agaaagttgg gtaactgatt caatagacaa
2761 gtgtgaatta caagaagaaa accagtattt gatttaaagc taggtttcct agtgaggaaa
2821 gcctctgatc tggcagactc attgcagcag gtggtaatga taaaatacta aactacattt
2881 tatttttgta tcttaaaaat ctatgcctaa aaagtatcat tacatatagg aaaacaataa
2941 ttttaacttt taaggttgaa aagacaatag cccaaagcca agaaagaaaa attatcttga
3001 atgtagtatt caatgatttt ttatgatcaa ggtgaaataa acagtctaaa gaagaggtgt
3061 ttttataata tccatataga aatctagaat ttttacttag atactaataa aatacattta
3121 gaaactttta aagtcatgaa aaagcattaa ccttctaaac agtatattct aaaaagtcaa
3181 aacgttaaca atagttttta tctaataaaa gcactgcaag aaaatagggt agaattgtta
3241 cagctggact tgtaaaaata tgtcttttta ctcagggttt aaaatgtccc atttaaatat
3301 gaaatgtaaa caaatttgtt ttttaaggtt aaggccaaat gtaacaataa aaccctgtcg
3361 atggttttag ctaaattaga ggaagttgta tgagacttaa tgatctaaaa acttaaaatt
3421 gaattggttt gattaaaaat aaagcttgca attttaaaag tagctcacat ttaatttctt
3481 gtgtgaaata gaacatgctt taaaggaagt atttttatgt gaatttgcat tccagtataa
3541 atagtattca caaaaaagat tttcctagat tttatctatt gaatgggtgt caatatggca
3601 tgcatattgt aactttcatt agaaataagt tgctttgact tttaaaaatg acatagttag
3661 attatttaaa gtcaatgtat atagtatata ttatgtatgg atttatatac caaattttgg
3721 aatacagcct atctcatgac catattgaaa tgtacggaat ttgatccatg cgatactatg
3781 tgtgcattat ttgaaagtta ttggaaattt tattcaaacc gtggaacaaa tgtatgtgat
3841 tttgttatac ttcttaattt aaataaaata tttaatgcac tatt
//