LOCUS AK292143 1787 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ75052 complete cds, highly similar to Homo
sapiens SHC (Src homology 2 domain containing) transforming
protein 1 (SHC1), transcript variant 2, mRNA.
ACCESSION AK292143
VERSION AK292143.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1787)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1787
/clone="SYNOV4003405"
/clone_lib="SYNOV4"
/db_xref="H-InvDB:HIT000424940"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="synovial membrane tissue from rheumatoid
arthritis"
CDS 240..1664
/codon_start=1
/note="highly similar to Homo sapiens SHC (Src homology 2
domain containing) transforming protein 1 (SHC1),
transcript variant 2, mRNA"
/protein_id="BAF84832.1"
/transl_table=1
/translation="MNKLSGGGGRRTRVEGGQLGGEEWTRHGSFVNKPTRGWLHPNDK
VMGPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCEAVPGAKGATRRRKPC
SRPLSSILGRSNLKFAGMPITLTVSTSSLNLMAADCKQIIANHHMQSISFASGGDPDT
AEYVAYVAKDPVNQRACHILECPEGLAQDVISTIGQAFELRFKQYLRNPPKLVTPHDR
MAGFDGSAWDEEEEEPPDHQYYNDFPGKEPPLGGVVDMRLREGAAPGAARPTAPNAQT
PSHLGATLPVGQPVGGDPEVRKQMPPPPPCPAGRELFDDPSYVNVQNLDKARQAVGGA
GPPNPAINGSAPRDLFDMKPFEDALRVPPPPQSVSMAEQLRGEPWFHGKLSRREAEAL
LQLNGDFLVRESTTTPGQYVLTGLQSGQPKHLLLVDPEGVVRTKDHRFESVSHLISYH
MDNHLPIISAGSELCLQQPVERKL"
BASE COUNT 381 a 505 c 549 g 352 t
ORIGIN
1 actgcctttg tgcgcgatct cgcgctgcca ttggctaact cgggaaagtg ggaagcgtga
61 aggagggacc ctgaggtaga gggtcagggg ttagtgaggc cggaagtgag tgtaataaag
121 tttctccagg gaggcagggc ccggggagaa agttggagcg gtaacctaag ctggcagtgg
181 cgtgatccgg caccaaatcg gcccgcggtg cggtgcggag actccatgag gccctggaca
241 tgaacaagct gagtggaggc ggcgggcgca ggactcgggt ggaagggggc cagcttgggg
301 gcgaggagtg gacccgccac gggagctttg tcaataagcc cacgcggggc tggctgcatc
361 ccaacgacaa agtcatggga cccggggttt cctacttggt tcggtacatg ggttgtgtgg
421 aggtcctcca gtcaatgcgt gccctggact tcaacacccg gactcaggtc accagggagg
481 ccatcagtct ggtgtgtgag gctgtgccgg gtgctaaggg ggcgacaagg aggagaaagc
541 cctgtagccg cccgctcagc tctatcctgg ggaggagtaa cctgaaattt gctggaatgc
601 caatcactct caccgtctcc accagcagcc tcaacctcat ggccgcagac tgcaaacaga
661 tcatcgccaa ccaccacatg caatctatct catttgcatc cggcggggat ccggacacag
721 ccgagtatgt cgcctatgtt gccaaagacc ctgtgaatca gagagcctgc cacattctgg
781 agtgtcccga agggcttgcc caggatgtca tcagcaccat tggccaggcc ttcgagttgc
841 gcttcaaaca atacctcagg aacccaccca aactggtcac ccctcatgac aggatggctg
901 gctttgatgg ctcagcatgg gatgaggagg aggaagagcc acctgaccat cagtactata
961 atgacttccc ggggaaggaa ccccccttgg ggggggtggt agacatgagg cttcgggaag
1021 gagccgctcc aggggctgct cgacccactg cacccaatgc ccagaccccc agccacttgg
1081 gagctacatt gcctgtagga cagcctgttg ggggagatcc agaagtccgc aaacagatgc
1141 cacctccacc accctgtcca gcaggcagag agctttttga tgatccctcc tatgtcaacg
1201 tccagaacct agacaaggcc cggcaagcag tgggtggtgc tgggcccccc aatcctgcta
1261 tcaatggcag tgcaccccgg gacctgtttg acatgaagcc cttcgaagat gctcttcgcg
1321 tgcctccacc tccccagtcg gtgtccatgg ctgagcagct ccgaggggag ccctggttcc
1381 atgggaagct gagccggcgg gaggctgagg cactgctgca gctcaatggg gacttcctgg
1441 tacgggagag cacgaccaca cctggccagt atgtgctcac tggcttgcag agtgggcagc
1501 ctaagcattt gctactggtg gaccctgagg gtgtggttcg gactaaggat caccgctttg
1561 aaagtgtcag tcaccttatc agctaccaca tggacaatca cttgcccatc atctctgcgg
1621 gcagcgaact gtgtctacag caacctgtgg agcggaaact gtgatctgcc ctagcgctct
1681 cttccagaag atgccctcca atcctttcca ccctattccc taactctcgg gacctcgttt
1741 gggagtgttc tatgggcttg gccttgtgtc agagctggga gtagcat
//