LOCUS AK292131 3784 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76921 complete cds, highly similar to Homo
sapiens protein tyrosine phosphatase, receptor type, C (PTPRC),
transcript variant 2, mRNA.
ACCESSION AK292131
VERSION AK292131.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3784)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3784
/clone="SYNOV4000966"
/clone_lib="SYNOV4"
/db_xref="H-InvDB:HIT000424928"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="synovial membrane tissue from rheumatoid
arthritis"
CDS 93..3524
/codon_start=1
/note="highly similar to Homo sapiens protein tyrosine
phosphatase, receptor type, C (PTPRC), transcript variant
2, mRNA"
/protein_id="BAF84820.1"
/transl_table=1
/translation="MYLWLKLLAFGFAFLDTEVFVTGQSPTPSPTDAYLNASETTTLS
PSGSAVISTTTIATTPSKPTCDEKYANITVDYLYNKETKLFTAKLNVNENVECGNNTC
TNNEVHNLTECKNASVSISHNSCTAPDKTLILDVPPGVEKFQLHDCTQVEKADTTICL
KWKNIETFTCDTQNITYRFQCGNMIFDNKEIKLENLEPEHEYKCDSEILYNNHKFTNA
SKIIKTDFGSPGEPQIIFCRSEAAHQGVITWNPPQRSFHNFTLCYIKETEKDCLNLDK
NLIKYDLQNLKPYTKYVLSLHAYIIAKVQRNGSAAMCHFTTKSAPPSQVWNMTVSMTS
DNSMHVKCRPPRDRNGPHERYHLEVEAGNTLVRNESHKNCDFRVKDLQYSTDYTFKAY
FHNGDYPGEPFILHHSTSYNSKALIAFLAFLIIVTSIALLVVLYKIYDLHKKRSCNLD
EQQELVERDDEKQLMNVEPIHADILLETYKRKIADEGRLFLAEFQSIPRVFSKFPIKE
ARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRKYIAAQGPR
DETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSMEEGTRAFGDVVVKINQHK
RCPDYIIQKLNIVNKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRVNAFSNFF
SGPIVVHCSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYI
LIHQALVEYNQFGETEVNLSELHPYLHNMKKRDPPSEPSPLEAEFQRLPSYRSWRTQH
IGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYIN
ASFIMSYWKPEVMIAAQGPLKETIGDFWQMIFQRKVKVIVMLTELKHGDQEICAQYWG
EGKQTYGDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEPK
ELISMIQVVKQKLPQKNSSEGNKHHKSTPLLIHCRDGSQQTGIFCALLNLLESAETEE
VVDIFQVVKALRKARPGMVSTFEQYQFLYDVIASTYPAQNGQVKKNNHQEDKIEFDNE
VDKVKQDANCVNPLGAPEKLPEAKEQAEGSEPTSGTEGPEHSVNGPASPALNQGS"
BASE COUNT 1279 a 703 c 793 g 1009 t
ORIGIN
1 agaggaggaa attgttcctc gtctgataag acaacagtgg agaaaggacg catgctgttt
61 cttagggaca cggctgactt ccagatatga ccatgtattt gtggcttaaa ctcttggcat
121 ttggctttgc ctttctggac acagaagtat ttgtgacagg gcaaagccca acaccttccc
181 ccactgatgc ctaccttaat gcctctgaaa caaccactct gagcccttct ggaagcgctg
241 tcatttcaac cacaacaata gctactactc catctaagcc aacatgtgat gaaaaatatg
301 caaacatcac tgtggattac ttatataaca aggaaactaa attatttaca gcaaagctaa
361 atgttaatga gaatgtggaa tgtggaaaca atacttgcac aaacaatgag gtgcataacc
421 ttacagaatg taaaaatgcg tctgtttcca tatctcataa ttcatgtact gctcctgata
481 agacattaat attagatgtg ccaccagggg ttgaaaagtt tcagttacat gattgtacac
541 aagttgaaaa agcagatact actatttgtt taaaatggaa aaatattgaa acctttactt
601 gtgatacaca gaatattacc tacagatttc agtgtggtaa tatgatattt gataataaag
661 aaattaaatt agaaaacctt gaacccgaac atgagtataa gtgtgactca gaaatactct
721 ataataacca caagtttact aacgcaagta aaattattaa aacagatttt gggagtccag
781 gagagcctca gattattttt tgtagaagtg aagctgcaca tcaaggagta attacctgga
841 atccccctca aagatcattt cataatttta ccctctgtta tataaaagag acagaaaaag
901 attgcctcaa tctggataaa aacctgatca aatatgattt gcaaaattta aaaccttata
961 cgaaatatgt tttatcatta catgcctaca tcattgcaaa agtgcaacgt aatggaagtg
1021 ctgcaatgtg tcatttcaca actaaaagtg ctcctccaag ccaggtctgg aacatgactg
1081 tctccatgac atcagataat agtatgcatg tcaagtgtag gcctcccagg gaccgtaatg
1141 gcccccatga acgttaccat ttggaagttg aagctggaaa tactctggtt agaaatgagt
1201 cgcataagaa ttgcgatttc cgtgtaaaag atcttcaata ttcaacagac tacactttta
1261 aggcctattt tcacaatgga gactatcctg gagaaccctt tattttacat cattcaacat
1321 cttataattc taaggcactg atagcatttc tggcatttct gattattgtg acatcaatag
1381 ccctgcttgt tgttctctac aaaatctatg atctacataa gaaaagatcc tgcaatttag
1441 atgaacagca ggagcttgtt gaaagggatg atgaaaaaca actgatgaat gtggagccaa
1501 tccatgcaga tattttgttg gaaacttata agaggaagat tgctgatgaa ggaagacttt
1561 ttctggctga atttcagagc atcccgcggg tgttcagcaa gtttcctata aaggaagctc
1621 gaaagccctt taaccagaat aaaaaccgtt atgttgacat tcttccttat gattataacc
1681 gtgttgaact ctctgagata aacggagatg cagggtcaaa ctacataaat gccagctata
1741 ttgatggttt caaagaaccc aggaaataca ttgctgcaca aggtcccagg gatgaaactg
1801 ttgatgattt ctggaggatg atttgggaac agaaagccac agttattgtc atggtcactc
1861 gatgtgaaga aggaaacagg aacaagtgtg cagaatactg gccgtcaatg gaagagggca
1921 ctcgggcttt tggagatgtt gttgtaaaga tcaaccagca caaaagatgt ccagattaca
1981 tcattcagaa attgaacatt gtaaataaaa aagaaaaagc aactggaaga gaggtgactc
2041 acattcagtt caccagctgg ccagaccacg gggtgcctga ggatcctcac ttgctcctca
2101 aactgagaag gagagtgaat gccttcagca atttcttcag tggtcccatt gtggtgcact
2161 gcagtgctgg tgttgggcgc acaggaacct atatcggaat tgatgccatg ctagaaggcc
2221 tggaagccga gaacaaagtg gatgtttatg gttatgttgt caagctaagg cgacagagat
2281 gcctgatggt tcaagtagag gcccagtaca tcttgatcca tcaggctttg gtggaataca
2341 atcagtttgg agaaacagaa gtgaatttgt ctgaattaca tccatatcta cataacatga
2401 agaaaaggga tccacccagt gagccgtctc cactagaggc tgaattccag agacttcctt
2461 catataggag ctggaggaca cagcacattg gaaatcaaga agaaaataaa agtaaaaaca
2521 ggaattctaa tgtcatccca tatgactata acagagtgcc acttaaacat gagctggaaa
2581 tgagtaaaga gagtgagcat gattcagatg aatcctctga tgatgacagt gattcagagg
2641 aaccaagcaa atacatcaat gcatctttta taatgagcta ctggaaacct gaagtgatga
2701 ttgctgctca gggaccactg aaggagacca ttggtgactt ttggcagatg atcttccaaa
2761 gaaaagtcaa agttattgtt atgctgacag aactgaaaca tggagaccag gaaatctgtg
2821 ctcagtactg gggagaagga aagcaaacat atggagatat tgaagttgac ctgaaagaca
2881 cagacaaatc ttcaacttat acccttcgtg tctttgaact gagacattcc aagaggaaag
2941 actctcgaac tgtgtaccag taccaatata caaactggag tgtggagcag cttcctgcag
3001 aacccaagga attaatctct atgattcagg tcgtcaaaca aaaacttccc cagaagaatt
3061 cctctgaagg gaacaagcat cacaagagta cacctctact cattcactgc agggatggat
3121 ctcagcaaac gggaatattt tgtgctttgt taaatctctt agaaagtgcg gaaacagaag
3181 aggtagtgga tatttttcaa gtggtaaaag ctctacgcaa agctaggcca ggcatggttt
3241 ccacattcga gcaatatcaa ttcctatatg acgtcattgc cagcacctac cctgctcaga
3301 atggacaagt aaagaaaaac aaccatcaag aagataaaat tgaatttgat aatgaagtgg
3361 acaaagtaaa gcaggatgct aattgtgtta atccacttgg tgccccagaa aagctccctg
3421 aagcaaagga acaggctgaa ggttctgaac ccacgagtgg cactgagggg ccagaacatt
3481 ctgtcaatgg tcctgcaagt ccagctttaa atcaaggttc ataggaaaag acataaatga
3541 ggaaactcca aacctcctgt tagctgttat ttctattttt gtagaagtag gaagtgaaaa
3601 taggtataca gtggattaat taaatgcagc gaaccaatat ttgtagaagg gttatatttt
3661 actactgtgg aaaaatattt aagatagttt tgccagaaca gtttgtacag acgtatgctt
3721 attttaaaat tttatctctt attcagtaaa aaacaacttc tttgtaatcg ttatgtgtgt
3781 atat
//