LOCUS AK291921 2613 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77162 partial cds, highly similar to Homo
sapiens SMC1 structural maintenance of chromosomes 1-like 1
(SMC1L1), mRNA.
ACCESSION AK291921
VERSION AK291921.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2613)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2613
/cell_line="SK-N-MC"
/cell_type="neuroepithelioma"
/clone="SKNMC2002839"
/clone_lib="SKNMC2"
/db_xref="H-InvDB:HIT000424718"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
CDS 88..>2613
/codon_start=1
/note="ighly similar to Homo sapiens SMC1 structural
maintenance of chromosomes 1-like 1 (SMC1L1), mRNA"
/protein_id="BAF84610.1"
/transl_table=1
/translation="MGFLKLIEIENFKSYKGRQIIGPFQRFTAIIGPNGSGKSNLMDA
ISFVLGEKTSNLRVKTLRDLIHGAPVGKPAANRAFVSMVYSEEGAEDRTFARVIVGGS
SEYKINNKVVQLHEYSEELEKLGILIKARNFLVFQGAVESIAMKNPKERTALFEEISR
SGELAQEYDKRKKEMVKAEEDTQFNYHRKKNIAAERKEAKQEKEEADRYQRLKDEVVR
AQVQLQLFKLYHNEVEIEKLNKELASKNKEIEKDKKRMDKVEDELKEKKKELGKMMRE
QQQIEKEIKEKDSELNQKRPQYIKAKENTSHKIKKLEAAKKSLQNAQKHYKKRKGDMD
ELEKEMLSVEKARQEFEERMEEESQSQGRDLTLEENQVKKYHRLKEEASKRAATLAQE
LEKFNRDQKADQDRLDLEERKKVETEAKIKQKLREIEENQKRIEKLEEYITTSKQSLE
EQKKLEGELTEEVEMAKRRIDEINKELNQVMEQLGDARIDRQESSRQQRKAEIMESIK
RLYPGSVYGRLIDLCQPTQKKYQIAVTKVLGKNMDAIIVDSEKTGRDCIQYIKEQRGE
PETFLPLDYLEVKPTDEKLRELKGAKLVIDVIRYEPPHIKKALQYACGNALVCDNVED
ARRIAFGGHQRHKTVALDGTLFQKSGVISGGASDLKAKARRWDEKAVDKLKEKKERLT
EELKEQMKAKRKEAELRQVQSQAHGLQMRLKYSQSDLEQTKTRHLALDLQEKSKLESE
LANFGPRINDIKRIIQSREREMKDLKEKMNQVEDEVFEEFCREIGVRNIREFEEEKVK
RQNEIAKKRLEFENQKTRLGIQLDFEKNQLKEDQDKVHMWEQTV"
BASE COUNT 808 a 535 c 802 g 468 t
ORIGIN
1 ttgcactgcg gcgtttcccg cgcgggctac ctcagttctc gggcgtacgg cgcggcctgt
61 cctactgccg ccggcgccgc ggccgtcatg gggttcctga aactgattga gattgagaac
121 tttaagtcgt acaagggtcg acagattatc ggaccatttc agaggttcac cgccatcatt
181 ggacccaatg gctctggtaa gtcaaatctc atggatgcca tcagctttgt gctaggtgaa
241 aaaaccagca acctgcgggt aaagaccctg cgggacctga tccatggagc tcctgtgggc
301 aagccagctg ccaaccgggc ctttgtcagc atggtctact ctgaggaggg tgctgaggac
361 cgtacctttg cccgtgtcat tgtaggaggt tcttctgagt acaagatcaa caacaaagtg
421 gtccaactac atgagtacag tgaggaatta gagaagttgg gcattctcat caaagctcgt
481 aacttcctcg ttttccaggg tgctgtggaa tctattgcca tgaagaaccc caaagagagg
541 acagctctat ttgaagagat tagtcgttct ggggagctgg cgcaggagta tgacaagcga
601 aagaaggaaa tggtgaaggc tgaagaggac acacagttta attaccatcg caagaaaaat
661 attgcggctg aacgcaagga agcaaagcag gagaaagaag aggctgaccg gtaccagcgc
721 ctgaaggatg aggtagtacg ggctcaggta cagctgcagc tctttaagct ttaccataat
781 gaagtggaaa ttgagaagct caacaaggaa ctggcctcaa agaacaagga gatcgagaag
841 gacaagaagc gtatggacaa ggtggaggat gaactgaagg agaagaagaa ggagctgggc
901 aaaatgatgc gggagcagca gcagattgag aaggagatca aggagaagga ctcagaattg
961 aaccagaagc ggcctcagta catcaaagcc aaggagaaca cctcccacaa aatcaagaag
1021 ctggaagcag ccaagaagtc tctgcagaat gctcagaagc actacaagaa gcgtaaaggt
1081 gacatggatg agctggagaa ggagatgctg tcagtggaga aggctcggca ggagtttgaa
1141 gaacggatgg aagaagagag tcagagtcag ggcagagatt tgacgttgga ggagaatcag
1201 gtgaagaaat accaccggtt gaaagaagaa gccagcaaga gagcagctac cctggcccag
1261 gagctggaga aattcaatcg agaccagaaa gctgaccagg accgtctgga tctggaagaa
1321 cggaagaaag tagagacaga ggccaagatc aagcaaaagc tgcgggaaat tgaagagaat
1381 cagaagcgga ttgagaaact ggaggaatac atcaccacta gcaagcagtc cctagaagag
1441 cagaagaagc tagaggggga gctgacagag gaggtggaga tggccaagcg gcgtattgat
1501 gaaatcaata aggagctgaa ccaggtgatg gagcagctag gggatgcccg catcgaccgc
1561 caggagagca gccgccagca gcgaaaggca gagataatgg aaagcatcaa gcgcctttac
1621 cctggctctg tgtacggccg cctcattgac ctatgccagc ccacacaaaa gaagtatcag
1681 attgctgtaa ccaaggtttt gggcaagaac atggatgcca ttattgtgga ctcggagaag
1741 acaggccggg actgtattca gtatatcaag gagcagcgtg gggagcctga gaccttcttg
1801 cctcttgact acctggaggt gaagcctaca gatgagaaac tccgggagct gaagggggcc
1861 aagctagtga ttgatgtgat tcgctatgag ccacctcata tcaaaaaggc cctgcagtat
1921 gcttgtggca atgcccttgt ctgtgacaac gtggaagatg cccgccgcat tgcctttgga
1981 ggccaccagc gccacaagac agtggcactg gatggaaccc tattccagaa gtcaggagtg
2041 atctctggtg gggccagtga cctgaaggcc aaggcacggc gctgggatga gaaagcagta
2101 gacaagttga aagagaagaa ggagcgcttg acagaggagc tgaaagagca gatgaaggca
2161 aaacggaaag aggcagagct gcgtcaggtg cagtctcagg cccatggact gcagatgcgg
2221 ctcaagtact cccagagtga cctagaacag accaagacac gacatctagc cctggatctg
2281 caggaaaaat ccaagctgga gagtgagcta gccaactttg ggcctcgcat taatgatatc
2341 aagaggatca ttcagagccg agagagggaa atgaaagact tgaaggagaa gatgaaccag
2401 gtagaggatg aggtgtttga agagttttgt cgggagattg gtgtgcgcaa catccgggag
2461 tttgaggaag aaaaggtgaa acggcagaat gaaatcgcca agaagcgttt ggagtttgag
2521 aatcagaaga ctcgcttggg cattcagttg gattttgaaa agaaccaact gaaggaggac
2581 caagataaag tacacatgtg ggagcagaca gtg
//