LOCUS AK291810 2678 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78719 complete cds, highly similar to Homo
sapiens scavenger receptor class F, member 1, transcript variant
1, mRNA.
ACCESSION AK291810
VERSION AK291810.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2678)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2678
/clone="PROST2010417"
/clone_lib="PROST2"
/db_xref="H-InvDB:HIT000424607"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="prostate"
CDS 36..2528
/codon_start=1
/note="highly similar to Homo sapiens scavenger receptor
class F, member 1, transcript variant 1, mRNA"
/protein_id="BAF84499.1"
/transl_table=1
/translation="MGLGLLLPLLLLWTRGTQGSELDPKGQHVCVASSPSAELQCCAG
WRQKDQECTIPICEGPDACQKDEVCVKPGLCRCKPGFFGAHCSSRCPGQYWGPDCRES
CPCHPHGQCEPATGACQCQADRWGARCEFPCACGPHGRCDPATGVCHCEPGWWSSTCR
RPCQCNTAAARCEQATGACVCKPGWWGRRCSFRCNCHGSPCEQDSGRCACRPGWWGPE
CQQQCECVRGRCSAASGECTCPPGFRGARCELPCPAGSHGVQCAHSCGRCKHNEPCSP
DTGSCESCEPGWNGTQCQQPCLPGTFGESCEQQCPHCRHGEACEPDTGHCQRCDPGWL
GPRCEDPCPTGTFGEDCGSTCPTCVQGSCDTVTGDCVCSAGYWGPSCNASCPAGFHGN
NCSVPCECPEGLCHPVSGSCQPGSGSRDTALIAGSLVPLLLLFLGLACCACCCWAPRS
DLKDRPARDGATVSRMKLQVWGTLTSLGSTLPCRSLSSHKLPWVTVSHHDPEVPFNHS
FIEPPSAGWATDDSFSSDPESGEADEVPAYCVPPQEGMVPVAQAGSSEASLAAGAFPP
PEDASTPFAIPRTSSLARAKRLSVSFAEGTKFAPQSRRSSGELSSPLRKPKRLSRGAQ
SSPEGREAEESTGPDEAEAPESFPAAASPGDSATGHRRPPLGSRTVAEHVEAIEGSVQ
ESSGPVTTIYMLAGKPRGSEGPVRSVFRHFGSFQKGQAEAKVKRAIPKPPRQALNRKK
GSPGLASGSVGQSPNSAPKAGLPGATGPMAVRPEEAVRGLGAGTESSRRAQEPVSGCG
SPEQDPQKQAEEERQEEPEYENVVPISRPPEP"
BASE COUNT 455 a 909 c 881 g 433 t
ORIGIN
1 agacgaaccc gagcgctccc accgagctgc ctgccatggg gctggggctg ctgctcccgc
61 tgctgctgct ctggactcgg gggactcagg ggtccgagct ggaccccaaa gggcagcacg
121 tctgtgtggc cagcagcccc tctgctgagc tgcagtgctg cgcaggctgg aggcagaagg
181 atcaagaatg caccatcccc atctgtgagg ggccggacgc ctgccagaaa gacgaggtgt
241 gtgtgaagcc gggcctctgt cgatgcaagc ctggattctt tggggcccac tgcagctccc
301 gctgcccggg ccagtactgg ggccccgact gccgtgagag ctgcccctgc cacccgcacg
361 gccagtgcga gccagccacg ggcgcgtgcc agtgccaggc cgaccgctgg ggagcccgct
421 gcgagttccc gtgcgcctgc ggcccccacg ggcgctgcga ccccgcgacc ggcgtgtgcc
481 actgcgaacc cggctggtgg tcgtccacgt gccgccgccc gtgccagtgc aacaccgcgg
541 cggcgcgctg cgagcaggcc acgggcgcct gcgtgtgcaa gccgggctgg tgggggcgcc
601 gctgcagctt ccgctgcaac tgccacggct ccccgtgcga gcaggactcc ggccgctgcg
661 cctgccggcc gggctggtgg ggtcccgaat gccagcagca gtgcgagtgt gtgcggggcc
721 gctgcagcgc cgcctccggc gagtgcacct gcccgcccgg cttccgcgga gcgcgctgcg
781 agctgccctg cccggcaggc agccacgggg tgcagtgcgc acacagctgt ggccgctgca
841 aacacaatga gccgtgctct ccagacacag gcagctgtga gtcctgcgag ccgggctgga
901 acgggaccca gtgccagcag ccctgcctgc ctggcacctt tggcgagagc tgcgaacagc
961 agtgccctca ctgccgacat ggggaggcct gtgagccaga tactggccac tgtcagcgct
1021 gtgaccctgg ctggctgggg cccaggtgtg aagacccctg ccccactggt acctttgggg
1081 aagactgtgg ctctacctgc cccacctgtg ttcaggggtc ctgtgatact gtgacagggg
1141 actgtgtctg cagtgccggc tactgggggc ccagctgcaa cgcctcctgc ccagccggtt
1201 tccatggaaa caactgctca gttccttgtg aatgcccaga gggactctgc caccctgtct
1261 ctgggtcctg ccagccaggc tctggcagtc gggacactgc cctcatcgcg ggcagccttg
1321 tgcctctgct gctgctcttc ctgggccttg cctgctgtgc ctgctgctgc tgggcccccc
1381 gatcagacct caaggacagg ccagcgagag atggagctac cgtgtccagg atgaagctgc
1441 aggtctgggg gacactgacc agcttgggct ccacgctgcc ctgccgttcc ctcagctccc
1501 acaagctacc ctgggtgaca gtctcacatc acgacccgga ggtccccttc aaccacagct
1561 tcatcgagcc gccctctgcc ggctgggcca ctgatgactc cttctcatcc gatcctgagt
1621 ctggagaggc agatgaggtt cctgcctact gtgtgccacc ccaagaaggg atggtccctg
1681 tggcccaggc agggtcgtca gaggccagcc tggctgcagg tgctttcccg ccccctgagg
1741 acgcctccac gccattcgcc atcccgcgca cctccagcct agctcgggcc aagcggctat
1801 cggtctcctt cgcggaaggt accaagtttg caccacagag tcgccgaagc tcaggggagc
1861 tctccagccc gctccgaaag cccaagaggc tctcccgggg ggcgcagtcg agtcctgagg
1921 gccgggaagc cgaagagtcc acaggcccag acgaagcaga agcccccgag tcctttccgg
1981 cggctgccag tcccggggat tcagccactg gccaccggcg gcccccactt ggtagccgga
2041 cagtggctga gcacgtggaa gccattgagg gcagcgtcca ggagagctcg ggccctgtga
2101 ccacgatcta catgctggca gggaagcccc gcggatccga aggccctgtc cgctctgtct
2161 tccgccattt tggtagcttc cagaaaggcc aggcggaagc caaggtcaag agggccatcc
2221 ctaagcctcc gcgccaggcc ctgaatcgga aaaagggcag ccctggcctt gcctctggct
2281 ctgtcggcca gagccccaac tcagccccaa aagctgggct tcctggggcc acagggccta
2341 tggcagtcag accagaggaa gcggtccggg ggctgggggc tggcaccgag agttcaagga
2401 gagcccagga gccagtctct ggctgtggct ccccagaaca ggatccccag aagcaggctg
2461 aagaggaaag gcaggaggaa cctgagtatg agaatgttgt acccatctcc aggccaccag
2521 aaccctgatg accttgaatt tggggagtgg ggagagtgga tggactagac tgtgctgtgt
2581 gctggaaaat gatcccgggg ccaggacaga caaaccagag cctctgcgcc tccacaggga
2641 aaaggcaagg cttccaggcc agttggccca ggcccctg
//