LOCUS AK291807 3346 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76670 complete cds, highly similar to Homo
sapiens ret proto-oncogene (multiple endocrine neoplasia and
medullary thyroid carcinoma 1, Hirschsprung disease) (RET),
transcript variant 4, mRNA.
ACCESSION AK291807
VERSION AK291807.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3346)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3346
/clone="PROST2005306"
/clone_lib="PROST2"
/db_xref="H-InvDB:HIT000424604"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="prostate"
CDS 61..3279
/codon_start=1
/note="highly similar to Homo sapiens ret proto-oncogene
(multiple endocrine neoplasia and medullary thyroid
carcinoma 1, Hirschsprung disease) (RET), transcript
variant 4, mRNA"
/protein_id="BAF84496.1"
/transl_table=1
/translation="MAKATSGAAGLRLLLLLLLPLLGKVALGLYFSRDAYWEKLYVDQ
AAGTPLLYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWICIQEDTGLLYLNRSLD
HSSWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSL
KPRELCFPETRPSFRIRENRPPGTFHQFRLLPVQFLCPNISVAYRLLEGEGLPFRCAP
DSLEVSTRWALDREQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPTFPAGV
DTASAVVEFKRKEDTVVATLRVFDADVVPASGELVRRYTSTLLPGDTWAQQTFRVEHW
PNETSVQANGSFVRATVHDYRLVLNRNLSISENRTMQLAVLVNDSDFQGPGAGVLLLH
FNVSVLPVSLHLPSTYSLSVSRRARRFAQIGKVCVENCQAFSGINVQYKLHSSGANCS
TLGVVTSAEDTSGILFVNDTKALRRPKCAELHYMVVATDQQTSRQAQAQLLVTVEGSY
VAEEAGCPLSCAVSKRRLECEECGGLGSPTGRCEWRQGDGKGITRNFSTCSPSTKTCP
DGHCDVVETQDINICPQDCLRGSIVGGHEPGEPRGIKAGYGTCNCFPEEEKCFCEPED
IQDPLCDELCRTVIAAAVLFSFIVSVLLSAFCIHCYHKFSHKPPISSAEMTFRRPAQA
FPVSYSSSGARRPSLDSMENQVSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVK
ATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDG
PLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAW
QISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIP
VKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLLKTGHRMER
PDNCSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMVKRRDYLDLAASTPSDSLIYD
DGLSEEETPLVDCNNAPLPRALPSTWIENKLYGRISHAFTRF"
BASE COUNT 656 a 1039 c 990 g 661 t
ORIGIN
1 atccagaccc gccggcccta gccgcagtcc ctccagccgt ggccccagcg cgcacgggcg
61 atggcgaagg cgacgtccgg tgccgcgggg ctgcgtctgc tgttgctgct gctgctgccg
121 ctgctaggca aagtggcatt gggcctctac ttctcgaggg atgcttactg ggagaagctg
181 tatgtggacc aggcggccgg cacgcccttg ctgtacgtcc atgccctgcg ggacgcccct
241 gaggaggtgc ccagcttccg cctgggccag catctctacg gcacgtaccg cacacggctg
301 catgagaaca actggatctg catccaggag gacaccggcc tcctctacct taaccggagc
361 ctggaccata gctcctggga gaagctcagt gtccgcaacc gcggctttcc cctgctcacc
421 gtctacctca aggtcttcct gtcacccaca tcccttcgtg agggcgagtg ccagtggcca
481 ggctgtgccc gcgtatactt ctccttcttc aacacctcct ttccagcctg cagctccctc
541 aagccccggg agctctgctt cccagagaca aggccctcct tccgcattcg ggagaaccga
601 cccccaggca ccttccacca gttccgcctg ctgcctgtgc agttcttgtg ccccaacatc
661 agcgtggcct acaggctcct ggagggtgag ggtctgccct tccgctgcgc cccggacagc
721 ctggaggtga gcacgcgctg ggccctggac cgcgagcagc gggagaagta cgagctggtg
781 gccgtgtgca ccgtgcacgc cggcgcgcgc gaggaggtgg tgatggtgcc cttcccggtg
841 accgtgtacg acgaggacga ctcggcgccc accttccccg cgggcgtcga caccgccagc
901 gccgtggtgg agttcaagcg gaaggaggac accgtggtgg ccacgctgcg tgtcttcgat
961 gcagacgtgg tacctgcatc aggggagctg gtgaggcggt acacaagcac gctgctcccc
1021 ggggacacct gggcccagca gaccttccgg gtggaacact ggcccaacga gacctcggtc
1081 caggccaacg gcagcttcgt gcgggcgacc gtacatgact ataggctggt tctcaaccgg
1141 aacctctcca tctcggagaa ccgcaccatg cagctggcgg tgctggtcaa tgactcagac
1201 ttccagggcc caggagcggg cgtcctcttg ctccacttca acgtgtcggt gctgccggtc
1261 agcctgcacc tgcccagtac ctactccctc tccgtgagca ggagggctcg ccgatttgcc
1321 cagatcggga aagtctgtgt ggaaaactgc caggcattca gtggcatcaa cgtccagtac
1381 aagctgcatt cctctggtgc caactgcagc acgctagggg tggtcacctc agccgaggac
1441 acctcgggga tcctgtttgt gaatgacacc aaggccctgc ggcggcccaa gtgtgccgaa
1501 cttcactaca tggtggtggc caccgaccag cagacctcta ggcaggccca ggcccagctg
1561 cttgtaacag tggaggggtc atatgtggcc gaggaggcgg gctgccccct gtcctgtgca
1621 gtcagcaaga gacggctgga gtgtgaggag tgtggcggcc tgggctcccc aacaggcagg
1681 tgtgagtgga ggcaaggaga tggcaaaggg atcaccagga acttctccac ctgctctccc
1741 agcaccaaga cctgccccga cggccactgc gatgttgtgg agacccaaga catcaacatt
1801 tgccctcagg actgcctccg gggcagcatt gttgggggac acgagcctgg ggagccccgg
1861 gggattaaag ctggctatgg cacctgcaac tgcttccctg aggaggagaa gtgcttctgc
1921 gagcccgaag acatccagga tccactgtgc gacgagctgt gccgcacggt gatcgcagcc
1981 gctgtcctct tctccttcat cgtctcggtg ctgctgtctg ccttctgcat ccactgctac
2041 cacaagtttt cccacaagcc acccatctcc tcagctgaga tgaccttccg gaggcccgcc
2101 caggccttcc cggtcagcta ctcctcttcc ggtgcccgcc ggccctcgct ggactccatg
2161 gagaaccagg tctccgtgga tgccttcaag atcctggagg atccaaagtg ggaattccct
2221 cggaagaact tggttcttgg aaaaactcta ggagaaggcg aatttggaaa agtggtcaag
2281 gcaacggcct tccatctgaa aggcagagca gggtacacca cggtggccgt gaagatgctg
2341 aaagagaacg cctccccgag tgagctgcga gacctgctgt cagagttcaa cgtcctgaag
2401 caggtcaacc acccacatgt catcaaattg tatggggcct gcagccagga tggcccgctc
2461 ctcctcatcg tggagtacgc caaatacggc tccctgcggg gcttcctccg cgagagccgc
2521 aaagtggggc ctggctacct gggcagtgga ggcagccgca actccagctc cctggaccac
2581 ccggatgagc gggccctcac catgggcgac ctcatctcat ttgcctggca gatctcacag
2641 gggatgcagt atctggccga gatgaagctc gttcatcggg acttggcagc cagaaacatc
2701 ctggtagctg aggggcggaa gatgaagatt tcggatttcg gcttgtcccg agatgtttat
2761 gaagaggatt cctacgtgaa gaggagccag ggtcggattc cagttaaatg gatggcaatt
2821 gaatcccttt ttgatcatat ctacaccacg caaagtgatg tatggtcttt tggtgtcctg
2881 ctgtgggaga tcgtgaccct agggggaaac ccctatcctg ggattcctcc tgagcggctc
2941 ttcaaccttc tgaagaccgg ccaccggatg gagaggccag acaactgcag cgaggagatg
3001 taccgcctga tgctgcaatg ctggaagcag gagccggaca aaaggccggt gtttgcggac
3061 atcagcaaag acctggagaa gatgatggtt aagaggagag actacttgga ccttgcggcg
3121 tccactccat ctgactccct gatttatgac gacggcctct cagaggagga gacaccgctg
3181 gtggactgta ataatgcccc cctccctcga gccctccctt ccacatggat tgaaaacaaa
3241 ctctatggta gaatttccca tgcatttact agattctagc accgctgtcc cctttgcact
3301 atccttcctc tctgtgatgc tttttaaaaa tgtttctggt ctgaac
//