LOCUS AK291546 1484 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ75707 complete cds, highly similar to Homo
sapiens serine palmitoyltransferase, long chain base subunit 1
(SPTLC1), transcript variant 1, mRNA.
ACCESSION AK291546
VERSION AK291546.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1484)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1484
/clone="PLACE1006618"
/clone_lib="PLACE1"
/db_xref="H-InvDB:HIT000424343"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="placenta"
CDS 5..1426
/codon_start=1
/note="highly similar to Homo sapiens serine
palmitoyltransferase, long chain base subunit 1 (SPTLC1),
transcript variant 1, mRNA"
/protein_id="BAF84235.1"
/transl_table=1
/translation="MATATEQWVLVEMVQALYEAPAYHLILEGILILWIIRLLFSKTY
KLQERSDLTVKEKEELIEEWQPEPLVPPVPKDHPALNYNIVSGPPSHKTVVNGKECIN
FASFNFLGLLDNPRVKAAALASLKKYGVGTCGPRGFYGTFDVHLDLEDRLAKFMKTEE
AIIYSYGFATIASAIPAYSKRGDIVFVDRAACFAIQKGLQASRSDIKLFKHNDMADLE
RLLKEQEIEDQKNPRKARVTRRFIVVEGLYMNTGTICPLPELVKLKYKYKARIFLEES
LSFGVLGEHGRGVTEHYGINIDDIDLISANMENALASIGGFCCGRSFVIDHQRLSGQG
YCFSASLPPLLAAAAIEALNIMEENPGIFAVLKEKCGQIHKALQGISGLKVVGESLSP
AFHLQLEESTGSREQDVRLLQEIVDQCMNRSIALTQARYLEKEEKCLPPPSIRVVVTV
EQTEEELERAASTIKEVAQAVLL"
BASE COUNT 424 a 317 c 354 g 389 t
ORIGIN
1 aactatggcg accgccacgg agcagtgggt tctggtggag atggtacagg cgctttacga
61 ggctcctgct taccatctta ttttggaagg gattctgatc ctctggataa tcagacttct
121 tttctctaag acttacaaat tacaagaacg atctgatctt acagtcaagg aaaaagaaga
181 actgattgaa gagtggcaac cagaacctct tgttcctcct gtcccaaaag accatcctgc
241 tctcaactac aacatcgttt caggccctcc aagccacaaa actgtggtga atggaaaaga
301 atgtataaac ttcgcctcat ttaattttct tggattgttg gataacccta gggttaaggc
361 agcagcttta gcatctctaa agaagtatgg cgtggggact tgtggaccca gaggatttta
421 tggcacattt gatgttcatt tggatttgga agaccgcctg gcaaaattta tgaagacaga
481 agaagccatt atatactcat atggatttgc caccatagcc agtgctattc ctgcttactc
541 taaaagaggg gacattgttt ttgtagatag agctgcctgc tttgctattc agaaaggatt
601 acaggcatcc cgtagtgaca ttaagttatt taagcataat gacatggctg acctcgagcg
661 actactaaaa gaacaagaga tcgaagatca aaagaatcct cgcaaggctc gtgtaactcg
721 gcgtttcatt gtagtagaag gattgtatat gaatactgga actatttgtc ctcttccaga
781 attggttaag ttaaaataca aatacaaagc aagaatcttc ctggaggaaa gcctttcatt
841 tggagtccta ggagagcatg gccgaggagt cactgaacac tatggaatca atattgatga
901 tattgatctt atcagtgcca acatggagaa tgcacttgct tctattggag gtttctgctg
961 tggcaggtct tttgtaattg accatcagcg actttccggc cagggatact gcttttcagc
1021 ttcgttacct cccctgttag ctgctgcagc aattgaggcc ctcaacatca tggaagagaa
1081 tccaggtatt tttgcagtgt tgaaggaaaa gtgcggacaa attcataaag ctttacaagg
1141 catttctgga ttaaaagtgg tgggggagtc cctttctcca gcctttcacc tacaactgga
1201 agagagcact gggtctcgcg agcaagatgt cagactgctt caggaaattg tagatcaatg
1261 catgaacaga agtattgcat taactcaggc gcgctacttg gagaaagaag agaagtgtct
1321 ccctcctccc agcattcggg ttgtggtcac ggtggaacaa acagaggaag aactggagag
1381 agctgcgtcc accatcaagg aggtagccca ggccgtcctg ctctaggcag agtcccggga
1441 ccatggcctc ctgccacaca acacgcagag aggactcaag actc
//