LOCUS AK291407 4050 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77468 complete cds, highly similar to Homo
sapiens sema domain, seven thrombospondin repeats (type 1 and type
1-like), transmembrane domain (TM) and short cytoplasmic domain,
(semaphorin) 5B (SEMA5B), transcript variant 1, mRNA.
ACCESSION AK291407
VERSION AK291407.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4050)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4050
/clone="OCBBF3000280"
/clone_lib="OCBBF3"
/db_xref="H-InvDB:HIT000424204"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 305..3760
/codon_start=1
/note="highly similar to Homo sapiens sema domain, seven
thrombospondin repeats (type 1 and type 1-like),
transmembrane domain (TM) and short cytoplasmic domain,
(semaphorin) 5B (SEMA5B), transcript variant 1, mRNA"
/protein_id="BAF84096.1"
/transl_table=1
/translation="MPCGFSPSPVAHHLVPGPPDTPAQQLRCGWTVGGWLLSLVRGLL
PCLPPGARTAEGPIMVLAGPLAVSLLLPSLTLLVSHLSSSQDVSSEPSSEQQLCALSK
HPTVAFEDLQPWVSNFTYPGARDFSQLALDPSGNQLIVGARNYLFRLSLANVSLLQAT
EWASSEDTRRSCQSKGKTEEECQNYVRVLIVAGRKVFMCGTNAFSPMCTSRQVGNLSR
TIEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQ
YNSKWLNEPNFVAAYDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGGRFLLED
TWTTFMKARLNCSRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNL
SAISQAFNGPFRYQENPRAAWLPIANPIPNFQCGTLPETGPNENLTERSLQDAQRLFL
MSEAVQPVTPEPCVTQDSVRFSHLVVDLVQAKDTLYHVLYIGTESGTILKALSTASRS
LHGCYLEELHVLPPGRREPLRSLRILHSARALFVGLRDGVLRVPLERCAAYRSQGACL
GARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITACPVRNVTRDGGFGPWSPWQPCEHL
DGDNSGSCLCRARSCDSPRPRCGGLDCLGPAIHIANCSRNGAWTPWSSWALCSTSCGI
GFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGG
GMQSRRRACENGNSCLGCGVEFKTCNPEGCPEVRRNTPWTPWLPVNVTQGGARQEQRF
RFTCRAPLADPHGLQFGRRRTETRTCPADGSGSCDTDALVEVLLRSGSTSPHTVSGGW
AAWGPWSSCSRDCELGFRVRKRTCTNPEPRNGGLPCVGDAAEYQDCNPQACPVRGAWS
CWTSWSPCSASCGGGHYQRTRSCTSPAPSPGEDICLGLHTEEALCATQACPEGWSPWS
EWSKCTDDGAQSRSRHCEELLPGSSACAGNSSQSRPCPYSEIPVILPASSMEEATDCA
GFNLIHLVATGISCFLGSGLLTLAVYLSCQHCQRQSQESTLVHPATPNHLHYKGGGTP
KNEKYTPMEFKTLNKNNLIPDDRANFYPLQQTNVYTTTYYPSPLNKHSFRPEASPGQR
CFPNS"
BASE COUNT 713 a 1367 c 1229 g 741 t
ORIGIN
1 agttggagcg cgggggttgg tgccagagcc cagctccgcc gagccgggcg ggtcggcagc
61 gcatccagcg gctgctggga gcccgagcgc agcgggcgcg ggcccgggtg gggactgcac
121 cggagcgctg agagctggag gccgttcctg cgcggccgcc ccattcccag accggccgcc
181 agcccatctg gttagctccc gccgctccgc gccgcccggg agtcgggagc cgcggggaac
241 cgggcacctg cacccgcctc tgggagtgag tggctccagc tggtgcctgg cctgtgtctc
301 ttggatgccc tgtggcttca gtccgtctcc tgttgcccac cacctcgtcc ctgggccgcc
361 tgatacccca gcccaacagc taaggtgtgg atggacagta gggggctggc ttctctcact
421 ggtcaggggt cttctcccct gtctgcctcc cggagctagg actgcagagg ggcctatcat
481 ggtgcttgca ggccccctgg ctgtctcgct gttgctgccc agcctcacac tgctggtgtc
541 ccacctctcc agctcccagg atgtctccag tgagcccagc agtgagcagc agctgtgcgc
601 ccttagcaag caccccaccg tggcctttga agacctgcag ccgtgggtct ctaacttcac
661 ctaccctgga gcccgggatt tctcccagct ggctttggac ccctccggga accagctcat
721 cgtgggagcc aggaactacc tcttcagact cagccttgcc aatgtctctc ttcttcaggc
781 cacagagtgg gcctccagtg aggacacgcg ccgctcctgc caaagcaaag ggaagactga
841 ggaggagtgt cagaactacg tgcgagtcct gatcgtcgcc ggccggaagg tgttcatgtg
901 tggaaccaat gccttttccc ccatgtgcac cagcagacag gtggggaacc tcagccggac
961 tattgagaag atcaatggtg tggcccgctg cccctatgac ccacgccaca actccacagc
1021 tgtcatctcc tcccaggggg agctctatgc agccacggtc atcgacttct caggtcggga
1081 ccctgccatc taccgcagcc tgggcagtgg gccaccgctt cgcactgccc aatataactc
1141 caagtggctt aatgagccaa acttcgtggc agcctatgat attgggctgt ttgcatactt
1201 cttcctgcgg gagaacgcag tggagcacga ctgtggacgc accgtgtact ctcgcgtggc
1261 ccgcgtgtgc aagaatgacg tggggggccg attcctgctg gaggacacat ggaccacatt
1321 catgaaggcc cggctcaact gctcccgccc gggcgaggtc cccttctact ataacgagct
1381 gcagagtgcc ttccacttgc cggagcagga cctcatctat ggagttttca caaccaacgt
1441 aaacagcatc gcggcttctg ctgtctgcgc cttcaacctc agtgctatct cccaggcttt
1501 caatggccca tttcgctacc aggagaaccc cagggctgcc tggctcccca tagccaaccc
1561 catccccaat ttccagtgtg gcaccctgcc tgagaccggt cccaacgaga acctgacgga
1621 gcgcagcctg caggacgcgc agcgcctctt cctgatgagc gaggccgtgc agccggtgac
1681 acccgagccc tgtgtcaccc aggacagcgt gcgcttctca cacctcgtgg tggacctggt
1741 gcaggctaaa gacacgctct accatgtact ctacattggc accgagtcgg gcaccatcct
1801 gaaggcgctg tccacggcga gccgcagcct ccacggctgc tacctggagg agctgcacgt
1861 gctgcccccc gggcgccgcg agcccctgcg cagcctgcgc atcctgcaca gcgcccgcgc
1921 gctcttcgtg gggctgagag acggcgtcct gcgggtccca ctggagaggt gcgccgccta
1981 ccgcagccag ggggcatgcc tgggggcccg ggacccgtac tgtggctggg acgggaagca
2041 gcaacgttgc agcacactcg aggacagctc caacatgagc ctctggaccc agaacatcac
2101 cgcctgtcct gtgcggaatg tgacacggga tgggggcttc ggcccatggt caccatggca
2161 accatgtgag cacttggatg gggacaactc aggctcttgc ctgtgtcgag ctcgatcctg
2221 tgattcccct cgaccccgct gtgggggcct tgactgcctg gggccagcca tccacatcgc
2281 caactgctcc aggaatgggg cgtggacccc gtggtcatcg tgggcgctgt gcagcacgtc
2341 ctgtggcatc ggcttccagg tccgccagcg aagttgcagc aaccctgctc cccgccacgg
2401 gggccgcatc tgcgtgggca agagccggga ggaacggttc tgtaatgaga acacgccttg
2461 cccggtgccc atcttctggg cttcctgggg ctcctggagc aagtgcagca gcaactgtgg
2521 agggggcatg cagtcgcggc gtcgggcctg cgagaacggc aactcctgcc tgggctgcgg
2581 cgtggagttc aagacgtgca accccgaggg ctgccccgaa gtgcggcgca acaccccctg
2641 gacgccgtgg ctgcccgtga acgtgacgca gggcggggca cggcaggagc agcggttccg
2701 cttcacctgc cgcgcgcccc ttgcagaccc gcacggcctg cagttcggca ggagaaggac
2761 cgagacgagg acctgtcccg cggacggctc cggctcctgc gacaccgacg ccctggtgga
2821 ggtcctcctg cgcagcggga gcacctcccc gcacacggtg agcgggggct gggccgcctg
2881 gggcccgtgg tcgtcctgct cccgggactg cgagctgggc ttccgcgtcc gcaagagaac
2941 gtgcactaac ccggagcccc gcaacggggg cctgccctgc gtgggcgatg ctgccgagta
3001 ccaggactgc aacccccagg cttgcccagt tcggggtgct tggtcctgct ggacctcatg
3061 gtctccatgc tcagcttcct gtggtggggg tcactatcaa cgcacccgtt cctgcaccag
3121 ccccgcaccc tccccaggtg aggacatctg tctcgggctg cacacggagg aggcactatg
3181 tgccacacag gcctgcccag aaggctggtc gccctggtct gagtggagta agtgcactga
3241 cgacggagcc cagagccgaa gccggcactg tgaggagctc ctcccagggt ccagcgcctg
3301 tgctggaaac agcagccaga gccgcccctg cccctacagc gagattcccg tcatcctgcc
3361 agcctccagc atggaggagg ccaccgactg tgcagggttc aatctcatcc acttggtggc
3421 cacgggcatc tcctgcttct tgggctctgg gctcctgacc ctagcagtgt acctgtcttg
3481 ccagcactgc cagcgtcagt cccaggagtc cacactggtc catcctgcca cccccaacca
3541 tttgcactac aagggcggag gcaccccgaa gaatgaaaag tacacaccca tggaattcaa
3601 gaccctgaac aagaataact tgatccctga tgacagagcc aacttctacc cattgcagca
3661 gaccaatgtg tacacgacta cttactaccc aagccccctg aacaaacaca gcttccggcc
3721 cgaggcctca cctggacaac ggtgcttccc caacagctga taccgccgtc ctggggactt
3781 gggcttcttg ccttcataag gcacagagca gatggagatg ggacagtgga gccagtttgg
3841 ttttctccct ctgcactagg ccaagaactt gctgccttgc ctgtgggggg tcccatccgg
3901 cttcagagag ctctggctgg cattgaccat gggggaaagg gctggtttca ggctgacata
3961 tggccgcagg tccagttcag cccaggtctc tcatggttat cttccaaccc actgtcacgc
4021 tgacactatg ctgccatgcc tgggctgtgg
//