LOCUS AK291286 2150 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76837 complete cds, highly similar to Homo
sapiens zinc finger protein 539 (ZNF539), mRNA.
ACCESSION AK291286
VERSION AK291286.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2150)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2150
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP8008994"
/clone_lib="NT2RP8"
/db_xref="H-InvDB:HIT000424083"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 143..2095
/codon_start=1
/note="highly similar to Homo sapiens zinc finger protein
539 (ZNF539), mRNA"
/protein_id="BAF83975.1"
/transl_table=1
/translation="MGLLTFRDVAIEFSLEEWQHLDIAQQNLYRNVMLENYRNLAFLG
IAVSKPDLITCLEQGKEPWNMKRHEMVDEPPGMCPHFAQDLWPEQGMEDSFQKAILRR
YGKYGHENLQLRKGCKSVDEYKVNKEGYNGLNQCFTTAQSKVFQCDKYLKVFYKFLNS
NRPKIRHTEKKSFKCKKRVKLFCMLSHKTQHKSIYHREKSYKCKECGKTFNWSSTLTN
HRKIYTEEKPYKCEEYNKSPKQLSTLTTHEIIHAGEKLYKCEECGEAFNRSSNLTTHK
IIHTGEKPYKCEECGKAFIWSSTLTEHKKIHTRKKPYKCEECGKAFIWSSTLTRHKRM
HTGEKPYKCEECGKAFSQSSTLTTHKIIHTGEKRYKCLECGKAFKQLSTLTTHKIIHV
GEKLYKCEDCGKGFNRSSNLTTHKIIHTGEKPYKCEECGKAFIWSSTLTKHKRIHTRE
KPYKCEECGKAFIWSSTLTRHKRMHTGEKPYKCEECGKSFSQSSTLTTHKIIHTGEKP
YKCEECGKAFNWSSTLTKHKIIHTEEKPYKCEKCGKAFKQSSILTNHKRIHTGEKPYK
CEECGKSFNRSSTFTKHKVIHTGVKPYKCEECGKAFFWSSTLTKHKRIHTGEQPYKWE
KFGKAFNRSSHLTTDKITHWREILQV"
BASE COUNT 780 a 422 c 403 g 545 t
ORIGIN
1 gtctctcgct gtcgccggag tcccaggtct gtcttcactg ctctgtgtcc tctgctccta
61 gaggcccagc ctctgtggcg ctgttaccag caggtattgg agatccacag ctaagatgcc
121 aggaccccct agaagcctag aaatgggact gttgacattt agggatgtgg ccatagaatt
181 ctctctggag gagtggcaac acctggacat tgcacagcag aatttatata gaaatgtgat
241 gttagagaac tacagaaacc tggccttcct gggtattgct gtctctaagc cagacctgat
301 cacctgtctg gaacaaggga aagagccctg gaatatgaag cgacatgaga tggtggatga
361 acccccaggt atgtgtcctc attttgctca agacctttgg ccagagcagg gcatggaaga
421 ttcttttcaa aaagcaatac tgagaagata tggaaaatat ggacatgaga atttacagtt
481 aagaaaaggc tgtaaaagtg tggatgagta taaggtgaac aaagaaggtt ataatggact
541 taaccagtgt ttcacaactg cccagagcaa agtatttcaa tgtgataaat atttgaaagt
601 cttctataaa tttttaaatt caaacagacc taagataaga catactgaaa agaaatcttt
661 caaatgtaaa aaacgtgtca aattattttg catgctttca cataaaaccc aacacaaaag
721 catttatcat agagagaagt cctacaaatg taaagaatgt ggaaaaacct ttaattggtc
781 ctcaaccctt actaatcata ggaaaattta tactgaagag aaaccttaca aatgtgaaga
841 atataacaaa tctcctaagc aactctcaac ccttactaca catgaaataa ttcatgctgg
901 agagaaactc tacaaatgtg aagaatgtgg tgaagctttt aatcgatcct caaatcttac
961 tacacataag ataattcata ctggagagaa accttacaag tgtgaagaat gtggcaaagc
1021 atttatctgg tcctcaaccc ttactgagca taagaaaatt catactagaa agaaacccta
1081 caagtgtgaa gaatgtggca aagcatttat atggtcctca acactaacta gacataagag
1141 gatgcacact ggagagaaac cctacaaatg tgaagaatgt ggcaaagctt ttagccagtc
1201 ctcaaccctt actacacata agataattca tactggagag aaacgctaca aatgcttaga
1261 atgtggcaaa gcttttaagc aactctcaac tcttactaca cataaaataa ttcatgttgg
1321 agagaaactc tacaaatgtg aagattgcgg caaaggtttt aatcgatctt caaatcttac
1381 tacacataag ataattcata ctggagagaa accttacaag tgtgaagaat gtggcaaagc
1441 atttatctgg tcctcaaccc ttactaaaca taagagaatt catactagag agaaacccta
1501 caaatgtgaa gaatgtggca aggcatttat atggtcctca accctaacta gacataagag
1561 gatgcacact ggagagaaac cctacaaatg tgaagaatgt ggcaaatctt ttagccaatc
1621 ctcaaccctt actacacata agataattca tactggagag aaaccctaca aatgtgaaga
1681 atgtggcaaa gcctttaact ggtcctcaac tcttactaaa cataagataa ttcatactga
1741 agagaaaccc tacaaatgtg aaaaatgtgg caaagccttt aagcagtctt caatccttac
1801 taaccataag agaattcata ctggagagaa accctataaa tgtgaagaat gtggcaaatc
1861 ttttaaccgg tcttcaactt ttactaaaca taaggtaatt catactggag taaaacccta
1921 caaatgtgaa gaatgtggca aagcattttt ctggtcctca accctaacta aacataagag
1981 aattcatact ggagagcaac cctacaaatg ggaaaaattt ggcaaagcct ttaatcggtc
2041 ctcgcacctc accacagata agataactca ttggagagaa atcttacaag tatgaataat
2101 gtgccaaagc ctaagaaaac cctcaattct taatagatat aagattattc
//