LOCUS AK291177 2917 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76715 complete cds, highly similar to Homo
sapiens rhomboid family 1 (Drosophila) (RHBDF1), mRNA.
ACCESSION AK291177
VERSION AK291177.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2917)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2917
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP7014718"
/clone_lib="NT2RP7"
/db_xref="H-InvDB:HIT000423974"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 149..2716
/codon_start=1
/note="highly similar to Homo sapiens rhomboid family 1
(Drosophila) (RHBDF1), mRNA"
/protein_id="BAF83866.1"
/transl_table=1
/translation="MSEARRDSTSSLQRKKPPWLKLDIPSAVPLTAEEPSFLQPLRRQ
AFLRSVSMPAETAHISSPHHELRRPVLQRQTSITQTIRRGTADWFGVSKDSDSTQKWQ
RKSIRHCSQRYGKLKPQVLRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQKIIDPLA
RGRAFRVADDTAEGLSAPHTPVTPGAASLCSFSSSRSGFHRLPRRRKRESVAKMSFRA
AAALMKGRSVRDGTFRRAQRRSFTPASFLEEDTTDFPDELDTSFFAREGILHEELSTY
PDEVFESPSEAALKDWEKAPEQADLTGGALDRSELERSHLMLPLERGWRKQKEGAAAP
QPKVRLRQEVVSTAGPRRGQRIAVPVRKLFAREKRPYGLGMVGRLTNRTYRKRIDSFV
KRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGIAPVGFSQHETVDSVLRNRGVYEN
VKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFIRSAREREKHSACCVRNDRS
GCVQTSEEECSSTLAVWVKWPIHPSAPELAGHKRQFGSVCHQDPRVCDEPSSEDPHEW
PEDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHE
EATLCSQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGILHCLVSICFQMTVLRD
LEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQI
LARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFISGLFLSFAFLPYISFGKFDLY
RKRCQIIIFQVVFLGLLAGLVVLFYVYPVRCEWCEFLTCIPFTDKFCEKYELDAQLH"
BASE COUNT 515 a 979 c 872 g 551 t
ORIGIN
1 gcattcccgg gcgggccgga ccggcgggcg ggcggggact cggcgcgggc gccctcccgg
61 ccagcggcgg cagcccctcc tccccggcgc cctcaggacc ccccagagac ccccggcggc
121 ggcagcctgc cttgctctgc caggaaccat gagtgaggcc cgcagggaca gcacgagcag
181 cctgcagcgc aagaagccac cctggctaaa gctggacatt ccctctgcgg tgcccctgac
241 ggcagaagag cccagcttcc tgcagcccct gaggcgacag gctttcctga ggagtgtgag
301 tatgccagcc gagacagccc acatctcttc accccaccat gagctccggc ggccggtgct
361 gcaacgccag acgtccatca cacagaccat ccgcaggggg accgccgact ggtttggagt
421 gagcaaggac agtgacagca cccagaaatg gcagcgcaag agcatccgtc actgcagcca
481 gcgctacggg aagctgaagc cccaggtcct ccgggagctg gacctgccca gccaggacaa
541 cgtgtcgctg accagcaccg agacgccacc cccactctac gtggggccat gccagctggg
601 catgcagaag atcatagacc ccctggcccg tggccgtgcc ttccgtgtgg cagatgacac
661 tgcggaaggc ctgagtgccc cacacactcc cgtcacgccg ggtgctgcct ccctctgctc
721 cttctccagc tcccgctcag gtttccaccg gctcccgcgg cggcgcaagc gagagtcggt
781 ggccaagatg agcttccggg cggccgcagc gctgatgaaa ggccgctccg ttagggatgg
841 cacctttcgc cgggcacagc gtcgaagctt cactccagct agctttctgg aggaggacac
901 aactgatttc cccgatgagc tggacacatc cttctttgcc cgggaaggta tcctccatga
961 agagctgtcc acatacccgg atgaagtttt cgagtcccca tcggaggcag cgctaaagga
1021 ctgggagaag gcaccggagc aggcggacct caccggcggg gccctggacc gcagcgagct
1081 tgagcgcagc cacctgatgc tgcccttgga gcgaggctgg cggaagcaga aggagggcgc
1141 cgcagccccg cagcccaagg tgcggctccg acaggaggtg gtgagcaccg cggggccgcg
1201 acggggccag cgtatcgcgg tgccggtgcg caagctcttc gcccgggaga agcggccgta
1261 tgggctgggc atggtgggac ggctcaccaa ccgcacctac cgcaagcgca tcgacagctt
1321 cgtcaagcgc cagatcgagg acatggacga ccacaggccc ttcttcacct actggcttac
1381 cttcgtgcac tcgctcgtca ccatcctagc cgtgtgcatc tatggcatcg cgcccgtggg
1441 cttctcgcag catgagacgg tggactcggt gctgcggaac cgcggggtct acgagaacgt
1501 caagtacgtg cagcaggaga acttctggat cgggcccagc tcggaggccc tcatccacct
1561 gggcgccaag ttttcgccct gcatgcgcca ggacccgcag gtgcacagct tcattcgctc
1621 ggcgcgcgag cgcgagaagc actccgcctg ctgcgtgcgc aacgacaggt cgggctgcgt
1681 gcagacctcg gaggaggagt gctcgtccac gctggcagtg tgggtgaagt ggcccatcca
1741 tcccagcgcc ccagagcttg cgggccacaa gagacagttt ggctctgtct gccaccagga
1801 tcccagggtg tgtgatgagc cctcctccga agaccctcat gagtggccag aagacatcac
1861 caagtggccg atctgcacca aaaacagcgc tgggaaccac accaaccatc cccacatgga
1921 ctgtgtcatc acaggacggc cctgctgcat tggcaccaag ggcaggtgtg agatcacctc
1981 ccgggagtac tgtgacttca tgaggggcta cttccatgag gaggccacgc tctgctctca
2041 ggtgcactgc atggatgatg tgtgtgggct cctgcctttt ctcaaccccg aggtgcctga
2101 ccagttctac cgcctgtggc tatccctctt cctgcacgcc gggatcttgc actgcctggt
2161 gtccatctgc ttccagatga ctgtcctgcg ggacctggag aagctggcag gctggcaccg
2221 catagccatc atctacctgc tgagtggtgt caccggcaac ctggccagtg ccatcttcct
2281 gccataccga gcagaggtgg gtcctgctgg ctcccagttc ggcatcctgg cctgcctctt
2341 cgtggagctc ttccagagct ggcagatcct ggcgcggccc tggcgtgcct tcttcaagct
2401 gctggctgtg gtgctcttcc tcttcacctt tgggctgctg ccgtggattg acaactttgc
2461 ccacatctcg gggttcatca gtggcctctt cctctccttc gccttcttgc cctacatcag
2521 ctttggcaag ttcgacctgt accggaaacg ctgccagatc atcatctttc aggtggtctt
2581 cctgggcctc ctggctggcc tggtggtcct cttctacgtc tatcctgtcc gctgtgagtg
2641 gtgtgagttc ctcacctgca tccccttcac tgacaagttc tgtgagaagt acgaactgga
2701 cgctcagctc cactgagctg gctgcgggct ccagcggccg tgtgctccag caggccagag
2761 ccagacacga cctccctgag cctcacaggc ttacaggagt cacctgctcc atgtggggac
2821 tggcctgttt cctgaacaca gacctctttc ttgtgccttg ttcacttctg ttgaacccct
2881 cgtactgccg ggcatttatt atactacttc ctgtcat
//