LOCUS AK291036 3251 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77845 complete cds, highly similar to Homo
sapiens neuroligin 4, X-linked (NLGN4X), transcript variant 2,
mRNA.
ACCESSION AK291036
VERSION AK291036.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3251)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3251
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RI3005900"
/clone_lib="NT2RI3"
/db_xref="H-InvDB:HIT000423833"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells treated
2-weeks mitotic inhibitor after 5-weeks retinoic acid
(RA) induction."
/note="majorly NT2 neuron"
/organism="Homo sapiens"
CDS 502..2952
/codon_start=1
/note="highly similar to Homo sapiens neuroligin 4,
X-linked (NLGN4X), transcript variant 2, mRNA"
/protein_id="BAF83725.1"
/transl_table=1
/translation="MSRPQGLLWLPLLFTPVCVMLNSNVLLWLTALAIKFTLIDSQAQ
YPVVNTNYGKIRGLRTPLPNEILGPVEQYLGVPYASPPTGERRFQPPEPPSSWTGIRN
TTQFAAVCPQHLDERSLLHDMLPIWFTANLDTLMTYVQDQNEDCLYLNIYVPTEDDIH
DQNSKKPVMVYIHGGSYMEGTGNMIDGSILASYGNVIVITINYRLGILGFLSTGDQAA
KGNYGLLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGASCVSLLTLSHYSEGLFQKA
IIQSGTALSSWAVNYQPAKYTRILADKVGCNMLDTTDMVECLRNKNYKELIQQTITPA
TYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVDGIVDNEDGVTP
NDFDFSVSNFVDNLYGYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWV
APAVATADLHAQYGSPTYFYAFYHHCQSEMKPSWADSAHGDEVPYVFGIPMIGPTELF
SCNFSKNDVMLSAVVMTCWTNFAKTGDPNQPVPQDTKFIHTKPNRFEEVAWSKYNPKD
QLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNLNEIFQYVSTTTKVPPPDMTSFPYG
TRRSPAKIWPTTKRPAITPANNPKHSKDPHKTGPEDTTVLIETKRDYSTELSVTIAVG
ASLLFLNILAFAALYYKKDKRRHETHRRPSPQRNTTNDIAHIQNEEIMSLQMKQLEHD
HECESLQAHDTLRLTCPPDYTLTLRRSPDDIPLMTPNTITMIPNTLTGMQPLHTFNTF
SGGQNSTNLPHGHSTTRV"
BASE COUNT 827 a 938 c 791 g 695 t
ORIGIN
1 agaactgatg gagaagatcc gccaagcgcg cagccggcgg cggaggagac agtgcggggt
61 gggcgagggg cttcgagacc acgcagagag agagtgaact tcagtcctga cccctcccca
121 aggccgcggc tggggcgccc acagcccgcg ctggcacccg cgtggcctga cctgcggaag
181 cgcgagcggg gatgaggctg ccttggagtt ttcataagaa attgtccctg gaggtgttgg
241 atgatcacag cttccttgga gcattgcagt tgctggaatc cagtttcagg attaagggag
301 ggctgcctcc ttgcaatggg ctgccaagaa aacggctgtg cttgttctta acctcaggct
361 ctgtctgtga tcagtctgag agtctctccc aggtctactg ctccctggaa agccctatct
421 ctctgcaggc tcgcctctgg gctttgtctc cttggagcca catcactggg acagctgtgg
481 atgtggatgc agatttgaac catgtcacgg ccccagggac tgctatggct tcctttgttg
541 ttcaccccgg tctgcgtcat gttaaactcc aatgtcctcc tgtggttaac tgctcttgcc
601 atcaagttca ccctcattga cagccaagca cagtatccag ttgtcaacac aaattatggc
661 aaaatccggg gcctaagaac accgttaccc aatgagatct tgggtccagt ggagcagtac
721 ttaggggtcc cctatgcctc accccccact ggagagaggc ggtttcagcc cccagaaccc
781 ccgtcctcct ggactggcat ccgaaatact actcagtttg ctgctgtgtg cccccagcac
841 ctggatgaga gatccttact gcatgacatg ctgcccatct ggtttaccgc caatttggat
901 actttgatga cctatgttca agatcaaaat gaagactgcc tttacttaaa catctacgtg
961 cccacggaag atgatattca tgatcagaac agtaagaagc ccgtcatggt ctatatccat
1021 gggggatctt acatggaggg caccggcaac atgattgacg gcagcatttt ggcaagctac
1081 ggaaacgtca tcgtgatcac cattaactac cgtctgggaa tactagggtt tttaagtacc
1141 ggtgaccagg cagcaaaagg caactatggg ctcctggatc agattcaagc actgcggtgg
1201 attgaggaga atgtgggagc ctttggcggg gaccccaaga gagtgaccat ctttggctcg
1261 ggggctgggg cctcctgtgt cagcctgttg accctgtccc actactcaga aggtctcttc
1321 cagaaggcca tcattcagag cggcaccgcc ctgtccagct gggcagtgaa ctaccagccg
1381 gccaagtaca ctcggatatt ggcagacaag gtcggctgca acatgctgga caccacggac
1441 atggtagaat gcctgcggaa caagaactac aaggagctca tccagcagac catcaccccg
1501 gccacctacc acatagcctt cgggccggtg atcgacggcg acgtcatccc agacgacccc
1561 cagatcctga tggagcaagg cgagttcctc aactacgaca tcatgctggg cgtcaaccaa
1621 ggggaaggcc tgaagttcgt ggacggcatc gtggataacg aggacggtgt gacgcccaac
1681 gactttgact tctccgtgtc caacttcgtg gacaaccttt acggctaccc tgaagggaaa
1741 gacactttgc gggagactat caagttcatg tacacagact gggccgataa ggaaaacccg
1801 gagacgcggc ggaaaaccct ggtggctctc tttactgacc accagtgggt ggcccccgcc
1861 gtggccaccg ccgacctgca cgcgcagtac ggctccccca cctacttcta tgccttctat
1921 catcactgcc aaagcgaaat gaagcccagc tgggcagatt cggcccatgg tgatgaggtc
1981 ccctatgtct tcggcatccc catgatcggt cccaccgagc tcttcagttg taacttttcc
2041 aagaacgacg tcatgctcag cgccgtggtc atgacctgct ggacgaactt cgccaaaact
2101 ggtgatccaa atcaaccagt tcctcaggat accaagttca ttcacacaaa acccaaccgc
2161 tttgaagaag tggcctggtc caagtataat cccaaagacc agctctatct gcatattggc
2221 ttgaaaccca gagtgagaga tcactaccgg gcaacgaaag tggctttctg gttggaactc
2281 gttcctcatt tgcacaactt gaacgagata ttccagtatg tttcaacaac cacaaaggtt
2341 cctccaccag acatgacatc atttccctat ggcacccggc gatctcccgc caagatatgg
2401 ccaaccacca aacgcccagc aatcactcct gccaacaatc ccaaacactc taaggaccct
2461 cacaaaacag ggcctgagga cacaactgtc ctcattgaaa ccaaacgaga ttattccacc
2521 gaattaagtg tcaccattgc cgtcggggcg tcgctcctct tcctcaacat cttagctttt
2581 gcggcgctgt actacaaaaa ggacaagagg cgccatgaga ctcacaggcg ccccagtccc
2641 cagagaaaca ccacaaatga tatcgctcac atccagaacg aagagatcat gtctctgcag
2701 atgaagcagc tggaacacga tcacgagtgt gagtcgctgc aggcacacga cacactgagg
2761 ctcacctgcc cgccagacta caccctcacg ctgcgccggt cgccagatga catcccactt
2821 atgacgccaa acaccatcac catgattcca aacacactga cggggatgca gcctttgcac
2881 acttttaaca ccttcagtgg aggacaaaac agtacaaatt taccccacgg acattccacc
2941 actagagtat agctttgccc tatttccctt cctatccctc tgccctaccc gctcagcaac
3001 atagaagagg gaaggaaaga gagaaggaaa gagagagaga aagaaagtct ccagaccagg
3061 aatgtttttg tcccactgac ttaagacaaa aatgcaaaaa ggcagtcatc ccatcccggc
3121 agacccttat cgttggtgtt ttccagtatt acaagatcaa cttctgaccc tgtgaaatgt
3181 gagaagtaca catttctgtt aaaataactg ctttaagatc tctaccactc caatcaatgt
3241 ttagtgtgat a
//