LOCUS AK291004 2249 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76276 complete cds, highly similar to Homo
sapiens pentatricopeptide repeat domain 1 (PTCD1), mRNA.
ACCESSION AK291004
VERSION AK291004.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2249)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2249
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RI3000156"
/clone_lib="NT2RI3"
/db_xref="H-InvDB:HIT000423801"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells treated
2-weeks mitotic inhibitor after 5-weeks retinoic acid
(RA) induction."
/note="majorly NT2 neuron"
/organism="Homo sapiens"
CDS 66..2168
/codon_start=1
/note="highly similar to Homo sapiens pentatricopeptide
repeat domain 1 (PTCD1), mRNA"
/protein_id="BAF83693.1"
/transl_table=1
/translation="MDFVRLARLFARARPMGLFILQHLDPCRARWAGGREGLMRPMWA
PFSSSSSQLPLGQERQENTGSLGSDPSHSNSTATQEEDEEEEESFGTLSDKYSSRRLF
RKSAAQFHNLRFGERRDEQMEPEPKLWRGRRNTPYWYFLQCKHLIKEGKLVEALDLFE
RQMLKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVC
AESPWKDSALQSALKLRQQLQAKNFELNLKTYHALLKMAAKCADLRMCLDVFKEIIHK
GHVVTEETFSFLLMGCIQDKKTGFRYALQVWRLMLSLGLQPSRDSYNLLLVAARDCGL
GDPQVASELLLKPREEATVLQPPVSRQRPRRTAQAKAGNLMSAMLHVEALERQLFLEP
SQALGPPEPPEARVPGKAQPEVDTKAEPSHTAALTAVALKPPPVELEVNLLTPGAVPP
TVVSFGTVTTPADRLALIGGLEGFLSKMAEHRQQPDIRTLTLLAEVVESGSPAESLLL
ALLDEHQVEADLTFFNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCH
RPKDGLQLLTDMKKSQVTPNTHIYSALINAAIRKLNYTYLISILKDMKQNRVPVNEVV
IRQLEFAAQYPPTFDRYQGKNTYLEKIDGFRAYYKQWLTVMPAEETPHPWQKFRTKPQ
GDQDTGKEADDGCALGGR"
BASE COUNT 517 a 676 c 691 g 365 t
ORIGIN
1 agggctcccc gtcggagtgc actgcgccgg acacttcaag ccctggaggg acaggaaagc
61 cagaaatgga cttcgtgaga ctcgctcgac tgttcgccag ggcccgcccc atgggactgt
121 tcatcctgca acacctggac ccctgtagag ccaggtgggc aggaggcagg gaggggctga
181 tgcggccaat gtgggcgccc ttcagcagct cctcctctca gctgcccctc ggccaggagc
241 gtcaggaaaa cacgggcagc ctgggctctg acccgagcca ctccaactcc acggccacgc
301 aggaagaaga cgaggaggag gaggagagtt ttgggaccct ctctgacaaa tactcctccc
361 ggagactatt ccgcaaatcc gcagcccagt tccataacct gcggtttggg gaacggagag
421 atgagcaaat ggaaccggag cccaaattat ggcgaggccg gagaaacacc ccgtactggt
481 acttcttgca gtgcaaacac ctgatcaagg aagggaagct ggttgaagcc ctggacctgt
541 ttgagaggca gatgctgaag gaggagcgat tgcagcccat ggagagcaac tacacggtgc
601 tgattggggg ctgcgggcgg gttggctacc tgaagaaggc cttcaacctc tacaaccaga
661 tgaaaaagcg ggacctggag ccctcggacg ccacctacac ggccctgttc aacgtctgtg
721 ccgagtcccc ctggaaggac tcagctctac agagcgccct gaagctccgg cagcagctgc
781 aggccaaaaa cttcgagctc aacttgaaaa cataccacgc gctgctgaag atggctgcca
841 agtgcgcaga ccttaggatg tgcctcgatg tgttcaagga aatcatccac aaagggcacg
901 tggtcacaga ggagaccttc agtttcctgc tcatgggctg catccaagac aagaagacag
961 gcttccggta cgccctccag gtgtggcggc tgatgctgag tctagggcta cagccgagcc
1021 gggacagcta caacctgctg ttggtggcag ctcgggactg tggcctaggg gacccccagg
1081 tggcctcaga gctgcttctg aagcccaggg aggaggcgac tgtgcttcag cccccagtga
1141 gcaggcagcg gccaaggagg acagcccagg ccaaggcagg caacctcatg tcagccatgc
1201 tgcatgtgga ggccctggag aggcagctgt ttctggaacc ttctcaggca cttgggcctc
1261 cagagcctcc ggaagccaga gtgcccggca aggcccaacc agaggtggat actaaggcag
1321 agcccagcca cacagcagcc ctcaccgcag tggccctgaa gccacctccc gtggagctgg
1381 aagtcaacct cctgaccccc ggggccgttc cccctacagt ggtctccttt ggaacggtga
1441 ccaccccagc tgaccggctg gccttgatag ggggcctgga gggcttcctg agcaagatgg
1501 cagagcacag gcagcagccc gacatcagga ccctcacgct actggccgag gtggtggagt
1561 ccgggagtcc tgcagagtcc ttgctgctgg ccctcctgga tgagcaccag gtagaggccg
1621 acctgacatt ctttaacacg ctggtgagaa agaagagcaa gctgggagac ctggaggggg
1681 ccaaggcgct gttgccggtc ctggcaaaga ggggcctcgt ccccaacctg cagacattct
1741 gcaacctggc catcgggtgc cacaggccga aggacggtct acagcttctc acagacatga
1801 agaagtccca ggtgaccccc aacactcaca tctacagtgc cctcatcaac gcggccatca
1861 ggaagctgaa ctacacctat ctcatcagca tcttgaagga catgaagcag aacagggtcc
1921 cggtgaacga agtggtcatc cgccagctgg agtttgcagc ccagtaccct cccacctttg
1981 accggtacca agggaagaac acctacctgg agaagattga cggcttccga gcctattaca
2041 agcagtggct gacagtgatg cccgcagagg aaaccccgca cccctggcag aagttccgga
2101 ccaagcccca gggggaccag gacaccggca aggaggctga tgacggatgt gcccttgggg
2161 gcaggtgatg ggagcacagc tggaacaatg tgctcggccc ccagtgctct gtgggagccc
2221 caggacaagt gagctggtgt cacctcctg
//