LOCUS AK290964 1504 bp mRNA linear HUM 09-JAN-2008 DEFINITION Homo sapiens cDNA FLJ77638 complete cds, highly similar to Homo sapiens SPT3-associated factor 42 (STAF42), mRNA. ACCESSION AK290964 VERSION AK290964.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 1504) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..1504 /cell_line="NT2" /cell_type="teratocarcinoma" /clone="NT2RI2002131" /clone_lib="NT2RI2" /db_xref="H-InvDB:HIT000423761" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /note="mRNA from NT2 neuronal precursor cells treated 2-weeks mitotic inhibitor after 5-weeks retinoic acid (RA) induction." /note="majorly NT2 neuron" /organism="Homo sapiens" CDS 2..1009 /codon_start=1 /note="highly similar to Homo sapiens SPT3-associated factor 42 (STAF42), mRNA" /protein_id="BAF83653.1" /transl_table=1 /translation="MATFVSELEAAKKNLSEALGDNVKQYWANLKLWFKQKISKEEFD LEAHRLLTQDNVHSHNDSLLAILTRCQILVSTPDGAGSLPWPGGSAAKPGKPKGKKKL SSVRQKFDHRFQPQNPLSGAQQFVAKDPQDDDDLKLCSHTMMLPTRGQLEGRMIVTAY EHGLDNVTEEAVSAVVYAVENHLKDILTSVVSRRKAYRLRDGHFKYAFGSNVTPQPYL KNSVVAYNNLIESPPAFTAPCAGQNPASHPPPDDAEQQAALLLACSGDTLPASLPPVN MYDLFEALQVHREVIPTHTVYALNIERIITKLWHPNHEELQQDKVHRQRLAAKEGLLL C" BASE COUNT 409 a 331 c 344 g 420 t ORIGIN 1 aatggcgacc tttgtgagcg agctggaggc ggccaagaag aacttaagcg aggccctggg 61 ggacaacgtg aaacaatact gggctaacct aaagctgtgg ttcaagcaga agatcagcaa 121 agaggagttt gaccttgaag ctcatagact tctcacacag gataatgtcc attctcacaa 181 tgattccctc ctggccattc tcacgcgttg tcagattttg gtttctacac cagatggtgc 241 tggatctttg ccttggccag ggggttccgc agcaaaacct ggaaaaccca agggaaagaa 301 aaagctttct tctgttcgtc agaaatttga tcatagattc cagcctcaaa atcctctctc 361 aggagcccag caatttgtgg caaaggatcc ccaagatgat gacgacttga aactttgttc 421 ccacacaatg atgcttccca ctcgaggcca gcttgaaggg agaatgatag tgactgctta 481 tgagcatggg ctggacaatg tcaccgagga ggctgtttca gctgttgtct atgctgtgga 541 gaatcacctt aaagatatac tgacgtcagt tgtgtcaaga aggaaagctt atcggttacg 601 agatggtcat tttaaatatg cctttggcag taacgtgacc ccgcagccat acctgaagaa 661 tagtgtagta gcttacaaca acttaataga aagccctcca gcttttactg ctccctgtgc 721 tggtcagaat ccagcttctc acccaccccc tgatgatgct gagcagcagg ctgcactcct 781 gctggcatgc tccggagaca ctctacctgc atctttgcct ccggtgaaca tgtacgatct 841 ttttgaagct ttgcaggtgc acagggaagt catccctaca catactgtct atgctcttaa 901 cattgaaagg atcatcacga aactctggca tccaaatcat gaagagctgc agcaagacaa 961 agttcaccgc cagcgcttgg cagccaagga ggggcttttg ctgtgctaaa ttaggatttg 1021 agggtgtggg accctcacca aattcattga ttactgaaaa ttgaatgttt tttgggtcca 1081 catttcaagg ctgaagtgta tagtgtatat ataacctttc ctatggaaat gtgacattga 1141 gtacattttg tgttgctatt gtgaagccat taatataaat ctttggtaat gacccatatc 1201 tctatatgta tgtgttccca gttgtgggag caggcactaa tgaaatcctg tgcctggaat 1261 ggagatattt aggtacctga ggcttagtgt cctgtggtct gcatgtaaga tagatgacat 1321 cctagaacaa agaagctgtt ttaacttaat ccccctgatc agctggatat ctgtgtgttc 1381 agtgacatca tacattctgt atctagaagt ctaaaatttc tgcctttctc ctaaagaatg 1441 tgttcttgca ttttggttga aataacctac acagtgttaa aaatcagata cctcctttag 1501 tgac //