LOCUS AK290896 1259 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78395 complete cds, highly similar to Homo
sapiens Nanog homeobox (NANOG), mRNA.
ACCESSION AK290896
VERSION AK290896.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1259)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1259
/cell_type="embryonal carcinoma"
/clone="NCRRP1000153"
/clone_lib="NCRRP1"
/db_xref="H-InvDB:HIT000423693"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from embryonal carcinoma after retinoic acid
(RA) induction."
/organism="Homo sapiens"
CDS 186..1103
/codon_start=1
/note="highly similar to Homo sapiens Nanog homeobox
(NANOG), mRNA"
/protein_id="BAF83585.1"
/transl_table=1
/translation="MSVDPACPQILPCFEASDCKESSPMPVICGPEENYPSLQMSSAE
MPHTETVSPLPSSMDLLIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVF
SSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPK
NSNGVTQKASAPTYPSLYSSYHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSN
HSWNTQTWCTQSWNNQAWNSPFYNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNV
IQQTTRYFSTPQTMDLFLNYSMNMQPEDV"
BASE COUNT 337 a 349 c 249 g 324 t
ORIGIN
1 gttctgctgg actgagctgg ttgcctcatg ttattatgca ggcaactcac tttatcccaa
61 tttcttgata cttttccttc tggaggtcct atttctctaa catcttccag aaaagtctta
121 aagctgcctt aacctttttt ccagtccacc tcttaaattt tttcctcctc ttcctctata
181 ctaacatgag tgtggatcca gcttgtcccc aaatcttgcc ttgctttgaa gcatccgact
241 gtaaagaatc ttcacctatg cctgtgattt gtgggcctga agaaaactat ccatccttgc
301 aaatgtcttc tgctgagatg cctcacacgg agactgtctc tcctcttcct tcctccatgg
361 atctgcttat tcaggacagc cctgattctt ccaccagtcc caaaggcaaa caacccactt
421 ctgcagagaa gagtgtcgca aaaaaggaag acaaggtccc ggtcaagaaa cagaagacca
481 gaactgtgtt ctcttccacc cagctgtgtg tactcaatga tagatttcag agacagaaat
541 acctcagcct ccagcagatg caagaactct ccaacatcct gaacctcagc tacaaacagg
601 tgaagacctg gttccagaac cagagaatga aatctaagag gtggcagaaa aacaactggc
661 cgaagaatag caatggtgtg acgcagaagg cctcagcacc tacctacccc agcctttact
721 cttcctacca ccagggatgc ctggtgaacc cgactgggaa ccttccaatg tggagcaacc
781 agacctggaa caattcaacc tggagcaacc agacccagaa catccagtcc tggagcaacc
841 actcctggaa cactcagacc tggtgcaccc aatcctggaa caatcaggcc tggaacagtc
901 ccttctataa ctgtggagag gaatctctgc agtcctgcat gcagttccag ccaaattctc
961 ctgccagtga cttggaggct gccttggaag ctgctgggga aggccttaat gtaatacagc
1021 agaccactag gtattttagt actccacaaa ccatggattt attcctaaac tactccatga
1081 acatgcaacc tgaagacgtg tgaagatgag tgaaactgat attactcaat ttcagtctgg
1141 acactggctg aatccttcct ctcccctcct cccatccctc ataggatttt tcttgtttgg
1201 aaaccacgtg ttctggtttc catgatgccc atccagtcaa tctcatggag ggtggagta
//