LOCUS AK290844 3467 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77094 partial cds, highly similar to Homo
sapiens apolipoprotein B (including Ag(x) antigen) (APOB), mRNA.
ACCESSION AK290844
VERSION AK290844.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3467)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3467
/clone="LIVER2008655"
/clone_lib="LIVER2"
/db_xref="H-InvDB:HIT000423641"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="liver"
CDS 129..>3467
/codon_start=1
/note="ighly similar to Homo sapiens apolipoprotein B
(including Ag(x) antigen) (APOB), mRNA"
/protein_id="BAF83533.1"
/transl_table=1
/translation="MDPPRPALLALLALPALLLLLLAGARAEEEMLENVSLVCPKDAT
RFKHLRKYTYNYEAESSSGVPGTADSRSATRINCKVELEVPQLCSFILKTSQCTLKEV
YGFNPEGKALLKKTKNSEEFAAAMSRYELKLAIPEGKQVFLYPEKDEPTYILNIKRGI
ISALLVPPETEEAKQVLFLDTVYGNCSTHFTVKTRKGNVATEISTERDLGQCDRFKPI
RTGISPLALIKGMTRPLSTLISSSQSCQYTLDAKRKHVAEAICKEQHLFLPFSYKNKY
GMVAQVTQTLKLEDTPKINSRFFGEGTKKMGLAFESTKSTSPPKQAEAVLKTLQELKK
LTISEQNIQRANLFNKLVTELRGLSDEAVTSLLPQLIEVSSPITLQALVQCGQPQCST
HILQWLKRVHANPLLIDVVTYLVALIPEPSAQQLREIFNMARDQRSRATLYALSHAVN
NYHKTNPTGTQELLDIANYLMEQIQDDCTGDEDYTYLILRAIGNMGQTMEQLTPELKS
SILKCVQSTKPSLMIQKAAIQALRKMEPKDKDQEVLLQTFLDDASPGDKRLAAYLMLM
RSPSQADINKIVQILPWEQNEQVKNFVASHIANILNSEELDIQDLKKLVKEVLKESQL
PTAMDFRKFSRNYQLYKSVSLPSLDPASAKIEGNLIFDPNNYLPKESMLKTTLTAFGF
ASADLIEIGLEGKGFEPTLEALFGKQGFFPDSVNKALYWVNGQVPDGISKVLVDHFGH
TKDDKHEQDMVNGIMLSVEKLIKDLKSKEVPEARAYLRILGEELGFASLHDLQLLGKL
LLMGARTLQGIPQMIGEVIRKGSKNDFFLHYIFMENAFELPTGAGLQLQISSSGVIAP
GAKAGVKLEVANMQAELVAKPSVSVEFVTNMGIIIPDFARSGVQMNTNFFHESGLEAH
VALKAGKLKFIIPSPKRPVKLLSGGNTLHLVSTTKTEVIPPLIENRQSWSVCKQVFPG
LNYCTSGAYSNASSTDSASYYPLTGDTRLELELRPTGEIEQYSVSATYELQREDRALV
DTLKFVTQAEGAKQTEATMTFKYNRQSMTLSSEVQIPDFDVDLGTILRVNDESTEGKT
SYRLTLDIQNKKITEVALMGHLSCD"
BASE COUNT 944 a 898 c 847 g 778 t
ORIGIN
1 attcccaccg ggacctgcgg ggctgagtgc ccttctcggt tgctgccgct gaggagcccg
61 cccagccagc cagggccgcg aggccgaggc caggccgcag cccaggagcc gccccaccgc
121 agctggcgat ggacccgccg aggcccgcgc tgctggcgct gctggcgctg cctgcgctgc
181 tgctgctgct gctggcgggc gccagggccg aagaggaaat gctggaaaat gtcagcctgg
241 tctgtccaaa agatgcgacc cgattcaagc acctccggaa gtacacatac aactatgagg
301 ctgagagttc cagtggagtc cctgggactg ctgattcaag aagtgccacc aggatcaact
361 gcaaggttga gctggaggtt ccccagctct gcagcttcat cctgaagacc agccagtgca
421 ccctgaaaga ggtgtatggc ttcaaccctg agggcaaagc cttgctgaag aaaaccaaga
481 actctgagga gtttgctgca gccatgtcca ggtatgagct caagctggcc attccagaag
541 ggaagcaggt tttcctttac ccggagaaag atgaacctac ttacatcctg aacatcaaga
601 ggggcatcat ttctgccctc ctggttcccc cagagacaga agaagccaag caagtgttgt
661 ttctggatac cgtgtatgga aactgctcca ctcactttac cgtcaagacg aggaagggca
721 atgtggcaac agaaatatcc actgaaagag acctggggca gtgtgatcgc ttcaagccca
781 tccgcacagg catcagccca cttgctctca tcaaaggcat gacccgcccc ttgtcaactc
841 tgatcagcag cagccagtcc tgtcagtaca cactggacgc taagaggaag catgtggcag
901 aagccatctg caaggagcaa cacctcttcc tgcctttctc ctacaagaat aagtatggga
961 tggtagcaca agtgacacag actttgaaac ttgaagacac accaaagatc aacagccgct
1021 tctttggtga aggtactaag aagatgggcc tcgcatttga gagcaccaaa tccacatcac
1081 ctccaaagca ggccgaagct gttttgaaga ctctccagga actgaaaaaa ctaaccatct
1141 ctgagcaaaa tatccagaga gctaatctct tcaataagct ggttactgag ctgagaggcc
1201 tcagtgatga agcagtcaca tctctcttgc cacagctgat tgaggtgtcc agccccatca
1261 ctttacaagc cttggttcag tgtggacagc ctcagtgctc cactcacatc ctccagtggc
1321 tgaaacgtgt gcatgccaac ccccttctga tagatgtggt cacctacctg gtggccctga
1381 tccccgagcc ctcagcacag cagctgcgag agatcttcaa catggcgagg gatcagcgca
1441 gccgagccac cttgtatgcg ctgagccacg cggtcaacaa ctatcataag acaaacccta
1501 cagggaccca ggagctgctg gacattgcta attacctgat ggaacagatt caagatgact
1561 gcactgggga tgaagattac acctatttga ttctgcgggc cattggaaat atgggccaaa
1621 ccatggagca gttaactcca gaactcaagt cttcaatcct gaaatgtgtc caaagtacaa
1681 agccatcact gatgatccag aaagctgcca tccaggctct gcggaaaatg gagcctaaag
1741 acaaggacca ggaggttctt cttcagactt tccttgatga tgcttctccg ggagataagc
1801 gactggctgc ctatcttatg ttgatgagga gtccttcaca ggcagatatt aacaaaattg
1861 tccaaattct accatgggaa cagaatgagc aagtgaagaa ctttgtggct tcccatattg
1921 ccaatatctt gaactcagaa gaattggata tccaagatct gaaaaagtta gtgaaagaag
1981 ttctgaaaga atctcaactt ccaactgcca tggacttcag aaaattctct cggaactatc
2041 aactctacaa atctgtttct cttccatcac ttgacccagc ctcagccaaa atagaaggga
2101 atcttatatt tgatccaaat aactaccttc ctaaagaaag catgctgaaa actaccctca
2161 ctgcctttgg atttgcttca gctgacctca tcgagattgg cttggaagga aaaggctttg
2221 agccaacatt ggaagctctt tttgggaagc aaggattttt cccagacagt gtcaacaaag
2281 ctttgtactg ggttaatggt caagttcctg atggtatctc taaggtctta gtggaccact
2341 ttggccatac caaagatgat aaacatgagc aggatatggt aaatggaata atgctcagtg
2401 ttgagaagct gattaaagat ttgaaatcca aagaagtccc ggaagccaga gcctacctcc
2461 gcatcttggg agaggagctt ggttttgcca gtctccatga cctccagctc ctgggaaagc
2521 tgcttctgat gggtgcccgc actctgcagg ggatccccca gatgattgga gaggtcatca
2581 ggaagggctc aaagaatgac ttttttcttc actacatctt catggagaat gcctttgaac
2641 tccccactgg agctggatta cagttgcaaa tatcttcatc tggagtcatt gctcccggag
2701 ccaaggctgg agtaaaactg gaagtagcca acatgcaggc tgaactggtg gcaaaaccct
2761 ccgtgtctgt ggagtttgtg acaaatatgg gcatcatcat tccggacttc gctaggagtg
2821 gggtccagat gaacaccaac ttcttccacg agtcgggtct ggaggctcat gttgccctaa
2881 aagctgggaa gctgaagttt atcattcctt ccccaaagag accagtcaag ctgctcagtg
2941 gaggcaacac attacatttg gtctctacca ccaaaacgga ggtgatccca cctctcattg
3001 agaacaggca gtcctggtca gtttgcaagc aagtctttcc tggcctgaat tactgcacct
3061 caggcgctta ctccaacgcc agctccacag actccgcctc ctactatccg ctgaccgggg
3121 acaccagatt agagctggaa ctgaggccta caggagagat tgagcagtat tctgtcagcg
3181 caacctatga gctccagaga gaggacagag ccttggtgga taccctgaag tttgtaactc
3241 aagcagaagg tgcgaagcag actgaggcta ccatgacatt caaatataat cggcagagta
3301 tgaccttgtc cagtgaagtc caaattccgg attttgatgt tgacctcgga acaatcctca
3361 gagttaatga tgaatctact gagggcaaaa cgtcttacag actcaccctg gacattcaga
3421 acaagaaaat tactgaggtc gccctcatgg gccacctaag ttgtgac
//