LOCUS AK290414 2571 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ75634 complete cds, highly similar to Homo
sapiens protein tyrosine phosphatase, receptor type, E (PTPRE),
transcript variant 2, mRNA.
ACCESSION AK290414
VERSION AK290414.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2571)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2571
/clone="D9OST2001592"
/clone_lib="D9OST2"
/db_xref="H-InvDB:HIT000423211"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from CD34+ cells after 9-days ODF induction."
/note="primary culture, CD34+ cells"
/organism="Homo sapiens"
/tissue_type="cord blood"
CDS 37..1965
/codon_start=1
/note="highly similar to Homo sapiens protein tyrosine
phosphatase, receptor type, E (PTPRE), transcript variant
2, mRNA"
/protein_id="BAF83103.1"
/transl_table=1
/translation="MSNRSSFSRLTWFRKQRKAVVSTSDKKMPNGILEEQEQQRVMLL
SRSPSGPKKYFPIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENR
EKNRYPNILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNKFIAAQGPKQETVNDF
WRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCWTYGNIRVCVEDCVVLVDYTIRK
FCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIVVH
CSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALL
EYYLYGDTELDVSSLEKHLQTTHGTTTHFDKIGLEEEFRKLTNVRIMKENMRTGNLPA
NMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKDYFIATQGPLAHTVE
DFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPTEGSVTHGEITIEIKNDTLSEAISI
RDFLVTLNQPQARQEEQVRVVRQFHFHGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNH
PITVHCSAGAGRTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFC
YKVVQDFIDIFSDYANFK"
BASE COUNT 760 a 594 c 604 g 613 t
ORIGIN
1 agacacacag aggccaggcc ttagcgcggc tcagccatga gcaacaggag tagcttttcc
61 cggctcacct ggttcaggaa gcagaggaaa gctgtggtca gcaccagcga caagaagatg
121 cccaacggaa tcttggagga gcaagagcag caaagggtga tgctgctcag caggtcaccc
181 tcagggccca agaagtattt tcccatcccc gtggagcacc tggaggagga gatccgtatc
241 agatccgccg acgactgcaa gcagtttcgg gaggagttca actcattgcc atctggacac
301 atacaaggaa cttttgaact ggcaaataaa gaagaaaaca gagaaaaaaa cagatatccc
361 aacatccttc ccaatgacca ttctagggtg attctgagcc aactggatgg aattccctgt
421 tcagactaca tcaatgcttc ctacatagat ggttacaaag agaagaataa attcatagca
481 gctcaaggtc ccaaacagga aacggttaac gacttctgga gaatggtctg ggagcaaaag
541 tctgcgacca tcgtcatgtt aacaaacttg aaagaaagga aagaggaaaa gtgccatcag
601 tactggcccg accaaggctg ctggacctat ggaaacatcc gggtgtgcgt ggaggactgc
661 gtggttttgg tcgactacac catccggaag ttctgcatac agccacagct ccccgacggc
721 tgcaaagccc ccaggctggt ctcacagctg cacttcacca gctggcccga cttcggagtg
781 ccttttaccc ccattgggat gctgaagttc ctcaagaaag taaagacgct caaccccgtg
841 cacgctgggc ccatcgtggt ccactgtagc gcgggcgtgg gccggacggg caccttcatt
901 gtgatcgatg ccatgatggc catgatgcac gcggagcaga aggtggatgt gtttgaattt
961 gtgtctcgaa tccgtaatca gcgccctcag atggttcaaa cggatatgca gtacacgttc
1021 atctaccaag ccttactcga gtactacctc tacggggaca cagagctgga cgtgtcctcc
1081 ctggagaagc acctgcagac cacgcacggc accaccaccc acttcgacaa gatcgggctg
1141 gaggaggagt tcaggaaatt gacaaatgtc cggatcatga aggagaacat gaggacgggc
1201 aacttgccgg caaacatgaa gaaggccagg gtcatccaga tcatcccgta tgacttcaac
1261 cgagtgatcc tttccatgaa aaggggtcaa gaatacacag actacatcaa cgcatccttc
1321 atagacggct accgacagaa ggactatttc atcgccaccc aggggccact ggcacacacg
1381 gttgaggact tctggaggat gatctgggaa tggaagtccc acactatcgt gatgctgacg
1441 gaggtgcagg agagagagca ggataaatgc taccagtatt ggccaaccga gggctcagtt
1501 actcatggag aaataacgat tgagataaag aatgataccc tttcagaagc catcagtata
1561 cgagactttc tggtcactct caatcagccc caggcccgcc aggaggagca ggtccgagta
1621 gtgcgccagt ttcacttcca cggctggcct gagatcggga ttcccgccga gggcaaaggc
1681 atgattgacc tcatcgcagc cgtgcagaag cagcagcagc agacaggcaa ccaccccatc
1741 accgtgcact gcagtgccgg agctgggcga acaggtacat tcatagccct cagcaacatt
1801 ttggagcgag taaaagccga gggactttta gatgtatttc aagctgtgaa gagtttacga
1861 cttcagagac cacatatggt gcaaaccctg gaacagtatg aattctgcta caaagtggta
1921 caagatttta ttgatatatt ttctgattat gctaatttca aatgaagatt cctgccttaa
1981 aatatttttt aatttaatgg tcagtatatt ttgtaaaaat catgttaatt tatttcatag
2041 ttgacattaa tatcttccct aatttctttg tatatatttt gttatgcctt aaaggccacc
2101 tgctatacag ttgttaaatc ttaaatatgc tttttaaaaa ttggaataat gtattaaggt
2161 caaataatat cccataaaat atatatttct gctaatatta gtaaatatct taatttttca
2221 ttagattcat atcatttaat ttcacatatt caacaccttt aaatgttgta atcttaatat
2281 gcgaagtgtg cctctgcaag atactaacac aaagctcatg ttaagaaaac agttgaggac
2341 tcagaagtca gttgaaaatg cactttccta acagtgaatt cacaaccctg aacagcagca
2401 tttttggaag gcaaactgtt cgtgatggta caatgtaaat ggggacttct gtaaagttct
2461 cagtttcggt ccacgtggtt tatctttaca ttttgaagat caaagaagtc tttacaacct
2521 gaatccaggt ctaaaacaca ctagagtagc tggtgactat aaataatatt t
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