LOCUS AK290233 3085 bp mRNA linear HUM 09-JAN-2008 DEFINITION Homo sapiens cDNA FLJ75622 complete cds, highly similar to Homo sapiens protein tyrosine phosphatase, receptor type, A (PTPRA), transcript variant 2, mRNA. ACCESSION AK290233 VERSION AK290233.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 3085) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..3085 /clone="BRTHA3027807" /clone_lib="BRTHA3" /db_xref="H-InvDB:HIT000423030" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="thalamus" CDS 333..2714 /codon_start=1 /note="highly similar to Homo sapiens protein tyrosine phosphatase, receptor type, A (PTPRA), transcript variant 2, mRNA" /protein_id="BAF82922.1" /transl_table=1 /translation="MDSWFILVLLGSGLICVSANNATTVAPSVGITRLINSSTAEPVK EEAKTSNPTSSLTSLSVAPTFSPNITLGPTYLTTVNSSDSDNGTTRTASTNSIGITIS PNGTWLPDNQFTDARTEPWEGNSSTAATTPETFPPSDETPIIAVMVALSSLLVIVFII IVLYMLRFKKYKQAGSHSNSFRLSNGRTEDVEPQSVPLLARSPSTNRKYPPLPVDKLE EEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNILPYDHSRVHLT PVEGVPDSDYINASFINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLK ERKECKCAQYWPDQGCWTYGNIRVSVEDVTVLVDYTVRKFCIQQVGDMTNRKPQRLIT QFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHCSAGVGRTGTFVVIDAML DMMHTERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGDTELEVTSLETH LQKIYNKIPGTSNNGLEEEFKKLTSIKIQNDKMRTGNLPANMKKNRVLQIIPYEFNRV IIPVKRGEENTDYVNASFIDGYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLT ELEERGQEKCAQYWPSDGLVSYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQ FHFHGWPEVGIPSDGKGMISIIAAVQKQQQQSGNHPITVHCSAGAGRTGTFCALSTVL ERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDAFSDYANFK" BASE COUNT 867 a 758 c 763 g 697 t ORIGIN 1 gctgccgcca tcactgtcgc ccgcccagtc gcccctcagc cgcttcccct cgccatggag 61 gcgaggccgc cgccgccgcc gcggggctcg gagccgcggg ccgggcggcg gccctgaggg 121 ctagtggcgg cccgaaacgc cgccgcggag ccgaggcgga gccgctgtcc tcgtccccag 181 cggtcccgcc caacgcccga ctctgtgaca caactaaaaa aaaacaaagg tatttatgga 241 attccactga gtggtaatgg atgatgcagt tcaaataact aaggacacat gttcaaagag 301 cataattaac tttttaaaag aagctaataa gcatggattc ctggttcatt cttgttctgc 361 tcggcagtgg tctgatatgt gtcagtgcca acaatgctac cacagttgca ccttctgtag 421 gaattacaag attaattaac tcatcaacgg cagaaccagt taaagaagag gccaaaactt 481 caaatccaac ttcttcacta acttctcttt ctgtggcacc aacattcagc ccaaatataa 541 ctctgggacc cacctattta accactgtca attcttcaga ctctgacaat gggaccacaa 601 gaacagcaag caccaattct ataggcatta caatttcacc aaatggaacg tggcttccag 661 ataaccagtt cacggatgcc agaacagaac cctgggaggg gaattccagc accgcagcaa 721 ccactccaga aactttccct ccttcagatg agacaccaat tattgcggtg atggtggccc 781 tgtcctctct gctagtgatc gtgtttatta tcatagtttt gtacatgtta aggtttaaga 841 aatacaagca agctgggagc cattccaatt ctttccgctt atccaacggc cgcactgagg 901 atgtggagcc ccagagtgtg ccacttctgg ccagatcccc aagcaccaac aggaaatacc 961 cacccctgcc cgtggacaag ctggaagagg aaattaaccg gagaatggca gacgacaata 1021 agctcttcag ggaggaattc aacgctctcc ctgcatgtcc tatccaggcc acctgtgagg 1081 ctgcttccaa ggaggaaaac aaggaaaaaa atcgatatgt aaacatcttg ccttatgacc 1141 actctagagt ccacctgaca ccggttgaag gggttccaga ttctgattac atcaatgctt 1201 cattcatcaa cggttaccaa gaaaagaaca aattcattgc tgcacaagga ccaaaagaag 1261 aaacggtgaa tgatttctgg cggatgatct gggaacaaaa cacagccacc atcgtcatgg 1321 ttaccaacct gaaggagaga aaggagtgca agtgcgccca gtactggcca gaccaaggct 1381 gctggaccta tgggaatatt cgggtgtctg tagaggatgt gactgtcctg gtggactaca 1441 cagtacggaa gttctgcatc cagcaggtgg gcgacatgac caacagaaag ccacagcgcc 1501 tcatcactca gttccacttt accagctggc cagactttgg ggtgcctttt accccgatcg 1561 gcatgctcaa gttcctcaag aaggtgaagg cctgtaaccc tcagtatgca ggggccatcg 1621 tggtccactg cagtgcaggt gtagggcgta caggtacctt tgtcgtcatt gatgccatgc 1681 tggacatgat gcatacagaa cggaaggtgg acgtgtatgg ctttgtgagc cggatccggg 1741 cacagcgctg ccagatggtg caaaccgata tgcagtatgt cttcatatac caagcccttc 1801 tggagcatta tctctatgga gatacagaac tggaagtgac ctctctagaa acccacctgc 1861 agaaaattta caacaaaatc ccagggacca gcaacaatgg attagaggag gagtttaaga 1921 agttaacatc aatcaaaatc cagaatgaca agatgcggac tggaaacctt ccagccaaca 1981 tgaagaagaa ccgtgtttta cagatcattc catatgaatt caacagagtg atcattccag 2041 ttaagcgggg cgaagagaat acagactatg tgaacgcatc ctttattgat ggctaccggc 2101 agaaggactc ctatatcgcc agccagggcc ctcttctcca cacaattgag gacttctggc 2161 gaatgatctg ggagtggaaa tcctgctcta tcgtgatgct aacagaactg gaggagagag 2221 gccaggagaa gtgtgcccag tactggccat ctgatggact ggtgtcctat ggagatatta 2281 cagtggaact gaagaaggag gaggaatgtg agagctacac cgtccgagac ctcctggtca 2341 ccaacaccag ggagaataag agccggcaga tccggcagtt ccacttccat ggctggcctg 2401 aagtgggcat ccccagtgac ggaaagggca tgatcagcat catcgccgcc gtgcagaagc 2461 agcagcagca gtcagggaac caccccatca ccgtgcactg cagcgccggg gcaggaagga 2521 cggggacctt ctgtgccctg agcaccgtcc tggagcgtgt gaaagcagag gggattttgg 2581 atgtcttcca gactgtcaag agcctgcggc tacagaggcc acacatggtc cagacactgg 2641 aacagtatga gttctgctac aaggtggtgc aggagtatat tgatgcattc tcagattatg 2701 ccaacttcaa gtaagcggca acaagggtcc gtggaccagg aggattgcct ttaatatttt 2761 gtaatattct gttttgttaa tataccccaa attgtgtata tatcttataa ctgttttaga 2821 aattggtaca taggcttcta ttacctatta ggtggaaatt ttatatgtaa atgtgttagc 2881 actgatagtc ctttttccaa tgttttattg gggaattaaa tagtgtgatg tttggattga 2941 tatcgtgaaa tcctcagccg agaaattggg ctggattgtg ctttggttaa tacatctttc 3001 cctaaagaag ataaacacaa aatccattcc aggtagctcg gcaccaacta agaaaaaaag 3061 cacaaagttc tcagagctct cgagg //