LOCUS AK290194 2038 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ75616 complete cds, highly similar to Homo
sapiens suppressor of cytokine signaling 5 (SOCS5), transcript
variant 1, mRNA.
ACCESSION AK290194
VERSION AK290194.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2038)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2038
/clone="BRTHA3011384"
/clone_lib="BRTHA3"
/db_xref="H-InvDB:HIT000422991"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="thalamus"
CDS 179..1789
/codon_start=1
/note="highly similar to Homo sapiens suppressor of
cytokine signaling 5 (SOCS5), transcript variant 1, mRNA"
/protein_id="BAF82883.1"
/transl_table=1
/translation="MDKVGKMWNNFKYRCQNLFGHEGGSRSENVDMNSNRCLSVKEKN
ISIGDSTPQQQSSPLRENIALQLGLSPSKNSSRRNQNCATEIPQIVEISIEKDNDSCV
TPGTRLARRDSYSRHAPWGGKKKHSCSTKTQSSLDADKKFGRTRSGLQRRERRYGVSS
VHDMDSVSSRTVGSRSLRQRLQDTVGLCFPMRTYSKQSKPLFSNKRKIHLSELMLEKC
PFPAGSDLAQKWHLIKQHTAPVSPHSTFFDTFDPSLVSTEDEEDRLRERRRLSIEEGV
DPPPNAQIHTFEATAQVNPLYKLGPKLAPGMTEISGDSSAIPQANCDSEEDTTTLCLQ
SRRQKQRQISGDSHTHVSRQGAWKVHTQIDYIHCLVPDLLQITGNPCYWGVMDRYEAE
ALLEGKPEGTFLLRDSAQEDYLFSVSFRRYNRSLHARIEQWNHNFSFDAHDPCVFHSS
TVTGLLEHYKDPSSCMFFEPLLTISLNRTFPFSLQYICRAVICRCTTYDGIDGLPLPS
MLQDFLKEYHYKQKVRVRWLEREPVKAK"
BASE COUNT 595 a 472 c 452 g 519 t
ORIGIN
1 caaaatggca gccgcgcaga gcgcgcaccc aagcggccgg acctccccga ctcccgggcc
61 gcccccgtct cgcgccctgc ctccctcctt cggccttcac ctacccgcct ccggattggc
121 cgctaggaat cccgcccctc taaagccctg cctgctattg gtcacgattt tataatcaat
181 ggataaagtg ggaaaaatgt ggaataactt caaatacagg tgtcagaatc tcttcggtca
241 tgagggagga agccgtagtg aaaatgtgga catgaactcc aacagatgtt tgtctgtcaa
301 agagaaaaac atcagcatag gagactcaac tcctcagcaa caaagcagtc ccttaagaga
361 aaatattgcc ttacaactgg gattaagccc ttcgaagaat tcttcaagga gaaatcaaaa
421 ttgtgccaca gaaatccctc aaattgttga aataagcatc gaaaaggata atgattcttg
481 tgttacccca ggaacaagac ttgcacgaag agattcctac tctcgacatg ctccatgggg
541 tgggaagaaa aaacattcct gttctacaaa gacccagagt tcattggatg ctgataaaaa
601 gtttggtaga actcgaagtg gacttcaaag gagagagagg cgctacggcg taagttctgt
661 acacgacatg gacagtgttt ccagcagaac tgtaggaagt cgctctctaa gacagaggtt
721 gcaggatact gtgggcttgt gttttcccat gagaacttac agcaagcagt caaagcctct
781 cttttccaat aaaagaaaaa tccatctctc tgaattaatg cttgagaaat gcccttttcc
841 tgctggctca gatttagccc aaaaatggca tttgattaaa cagcatacag ctcctgtgag
901 cccacattca acattttttg atacatttga tccatctttg gtttctacag aagatgaaga
961 agataggctt agagagagaa ggcggcttag tattgaagaa ggggttgatc cccctcccaa
1021 tgcacaaata catacatttg aagctactgc acaggttaat ccattatata aactgggacc
1081 aaaattagct cctggaatga ctgaaataag tggggacagt tctgcaattc cacaagctaa
1141 ttgtgactcg gaagaggata caaccaccct gtgtttgcag tcacggaggc agaagcagcg
1201 tcagatatct ggagacagcc atacccatgt tagcagacag ggagcttgga aagtccacac
1261 acagattgat tacatacact gcctcgtgcc tgatttgctt caaattacag ggaatccctg
1321 ttactgggga gtgatggacc gttatgaagc agaagccctt ctcgaaggga aacctgaagg
1381 cacgtttttg ctcagggact ctgcgcaaga ggactacctc ttctctgtga gcttccgccg
1441 ctacaacaga tccctgcatg cccgaattga gcagtggaat cacaacttta gtttcgacgc
1501 ccatgacccg tgtgtatttc actcctccac tgtaacggga cttttagaac attataaaga
1561 tcccagttcg tgcatgtttt ttgaaccatt gcttactata tcactaaata ggactttccc
1621 ttttagcctg cagtatatct gtcgcgcagt aatctgcagg tgcactacgt atgatggaat
1681 tgatgggctc cctctaccct caatgttaca ggatttttta aaagagtatc attataaaca
1741 aaaagttaga gttcgctggt tggaacgaga accagtcaag gcaaagtaaa ctctccggtc
1801 cccaaagggt gttaactagg tccgctttca tgtgcatcag acagtacacc tatagcaagc
1861 acacgtagca gtgttaggct ttttcataca gtatgtaagc ttagtgttag tatctgtcag
1921 atgctacctg ctgttactta ttcagataaa catggtgcct attggaacaa tagcggatag
1981 agctacaggt gttcagtaag actacaaaaa cattttgcct atttcgctaa cagtttgg
//