LOCUS AK290146 2667 bp mRNA linear HUM 09-JAN-2008 DEFINITION Homo sapiens cDNA FLJ78375 complete cds, highly similar to Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 1, mRNA. ACCESSION AK290146 VERSION AK290146.1 KEYWORDS FLI_CDNA; oligo capping. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 2667) AUTHORS Isogai,T. and Yamamoto,J. TITLE Direct Submission JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases. Contact:Takao Isogai Reverse Proteomics Research Institute; 1-9-11 Kaji-cho, Chiyoda-ku, Tokyo 101-0044, Japan E-mail :flj-cdna@nifty.com REFERENCE 2 AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K., Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y., Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M., Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T. TITLE NEDO human cDNA sequencing project JOURNAL Unpublished (2007) COMMENT Human cDNA sequencing project focused on splicing variants of mRNA in NEDO functional analysis of protein and research application project supported by Ministry of Economy, Trade and Industry, Japan; cDNA selection for complete cds sequencing: Reverse Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan (Hitachi) and Japan Biological Informatics Consortium, Japan (JBIC); cDNA complete cds sequencing: JBIC; cDNA library construction: Helix Research Institute supported by Japan Key Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing: Research Association for Biotechnology, Japan, Biotechnology Center, National Institute of Technology and Evaluation, Japan and HRI; cDNA mapping to human genome: Central Research Laboratory, Hitachi; evaluation and annotation: REPRORI. FEATURES Location/Qualifiers source 1..2667 /clone="BRTHA2031892" /clone_lib="BRTHA2" /db_xref="H-InvDB:HIT000422943" /db_xref="taxon:9606" /mol_type="mRNA" /note="cloning vector: pME18SFL3" /organism="Homo sapiens" /tissue_type="thalamus" CDS 59..2455 /codon_start=1 /note="highly similar to Homo sapiens cold shock domain containing E1, RNA-binding (CSDE1), transcript variant 1, mRNA" /protein_id="BAF82835.1" /transl_table=1 /translation="MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSE RQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERMNG QVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDVEGNVQLETGDKINF VIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKG DLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPS KNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNI EVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDGNQLHIADEVE FTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGK EKEAEDGIIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQVATCVR LLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSL SKGKGNKVSAEKVNKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEE GDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVK DQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCE GPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID " BASE COUNT 801 a 516 c 650 g 700 t ORIGIN 1 tacgtaccgg gccgtgctgc ttatggcggc gctggagagg gggcgctgag ctgttgggat 61 gagctttgat ccaaaccttc tccacaacaa tggacataat gggtacccta atggtacttc 121 agcagcactg cgtgaaactg gggttattga aaaactgtta acctcttacg gatttattca 181 gtgttcagaa cgtcaagcta gacttttctt ccactgttca cagtataatg gcaacctgca 241 agacttaaaa gtaggagatg atgttgaatt tgaagtatca tcggaccgac ggactgggaa 301 acccattgct gttaaactgg tgaagataaa acaagaaatc ctcccggaag aacgaatgaa 361 tggacaagtt gtgtgcgctg ttcctcacaa cttagagagt aaatctccag ctgccccggg 421 tcagagtcca acagggagtg tatgctacga acgtaatggg gaagtgtttt atctgactta 481 cacccctgaa gatgtcgaag ggaacgttca gctggaaact ggagataaaa taaactttgt 541 aattgataac aataaacata ctggtgctgt aagtgctcgc aacattatgc tgttgaaaaa 601 gaaacaagcc cgctgtcagg gagtagtttg tgccatgaag gaggcatttg gctttattga 661 aagaggtgat gttgtaaaag agatattctt tcactatagt gaatttaagg gtgacttaga 721 aaccttacag cctggcgatg atgtggaatt cacaatcaag gacagaaatg gtaaagaagt 781 tgcaacagat gtcagactat tgcctcaagg aacagtcatt tttgaagata tcagcattga 841 acattttgaa ggaactgtaa ccaaagttat cccaaaagta cccagtaaaa accagaatga 901 cccattgcca ggacgcatca aagttgactt tgtgatccct aaagaacttc cctttggaga 961 caaagatacg aaatccaagg tgaccctgct ggaaggtgac catgttaggt ttaatatttc 1021 aacagaccga cgtgacaaat tagagcgagc aaccaatata gaagttctgt caaatacatt 1081 tcagttcact aatgaagccc gagaaatggg tgtgattgct gccatgagag atggttttgg 1141 tttcatcaag tgtgtggatc gtgatgttcg tatgttcttc cacttcagtg aaattctgga 1201 tgggaaccag ctccatattg cagatgaagt agagtttact gtggttcctg atatgctctc 1261 tgctcaaaga aatcatgcta ttaggattaa aaaacttccc aagggcacgg tttcatttca 1321 ttcccattca gatcaccgtt ttctgggcac ggtagaaaaa gaagccactt tttccaatcc 1381 taaaaccact agcccaaata aaggcaaaga gaaggaggct gaggatggca ttattgctta 1441 tgatgactgt ggggtgaaac tgactattgc ttttcaagcc aaggatgtgg aaggatctac 1501 ttctcctcaa ataggagata aggttgaatt tagtattagt gacaaacaga ggcctggaca 1561 gcaggttgca acttgtgtgc gacttttagg tcgtaattct aactccaaga ggctcttggg 1621 ttatgtggca actctgaagg ataattttgg atttattgaa acagccaatc atgataagga 1681 aatctttttc cattacagtg agttctctgg tgatgttgat agcctggaac tgggggacat 1741 ggtcgagtat agcttgtcca aaggcaaagg caacaaagtc agtgcagaaa aagtgaacaa 1801 aacacactca gtgaatggca ttactgagga agctgatccc accatttact ctggcaaagt 1861 aattcgcccc ctgaggagtg ttgatccaac acagactgag taccaaggaa tgattgagat 1921 tgtggaggag ggcgatatga aaggtgaggt ctatccattt ggcatcgttg ggatggccaa 1981 caaaggggat tgcctgcaga aaggggagag cgtcaagttc caattgtgtg tcctgggcca 2041 aaatgcacaa actatggctt acaacatcac acccctgcgc agggccacag tggaatgtgt 2101 gaaagatcag tttggcttca ttaactatga agtaggagat agcaagaagc tctttttcca 2161 tgtgaaagaa gttcaggatg gcattgagct acaggcagga gatgaggtgg agttctcagt 2221 gattcttaat cagcgcactg gcaagtgcag cgcctgtaat gtttggcgag tctgtgaggg 2281 ccccaaggct gttgcagctc ctcgacctga tcggttggtc aatcgcttga agaatatcac 2341 tctggatgat gccagtgctc ctcgcctaat ggttcttcgt cagccaaggg gaccagataa 2401 ctcaatgggg tttggtgcag aaagaaagat ccgtcaagct ggtgtcattg actaaccaca 2461 tccacaaagc acaccattaa tccactatga tcaagttggg gggaatctgg tgaagggttc 2521 tgaatatctc cctcttcatc cctcccgaaa tctggaatac ttattctatt gagctattac 2581 accagtttta acaccttcct cgtgttatgt ttaaaaaaat aaataaattt aagaaaacca 2641 ttttaaataa tgcacagttg cagcctg //