LOCUS AK290053 3090 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77030 complete cds, highly similar to Homo
sapiens toll-like receptor 4 (TLR4), transcript variant 3, mRNA.
ACCESSION AK290053
VERSION AK290053.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3090)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3090
/clone="BRHIP3040053"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000422850"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 522..2921
/codon_start=1
/note="highly similar to Homo sapiens toll-like receptor
4 (TLR4), transcript variant 3, mRNA"
/protein_id="BAF82742.1"
/transl_table=1
/translation="MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLD
LSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE
NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQ
MPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL
VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV
SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS
LEFLDLSRNGLSFKGCCSQSDFGTTCLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS
NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD
IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV
LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVER
MECATPSDKQGMPVLSLNITCQMNKTIIGVSVLSVLVVSVVAVLVYKFYFHLMLLAGC
IKYGRGENIYDAFVIYSSQDEDWVRNELVKNLEEGVPPFQLCLHYRDFIPGVAIAANI
IHEGFHKSRKVIVVVSQHFIQSRWCIFEYEIAQTWQFLSSRAGIIFIVLQKVEKTLLR
QQVELYRLLSRNTYLEWEDSVLGRHIFWRRLRKALLDGKSWNPEGTVGTGCNWQEATS
I"
BASE COUNT 842 a 700 c 660 g 888 t
ORIGIN
1 ttctttagcc actggtctgc aggcgttttc ttcttctaac ttcctctcct gtgacaaaag
61 agataactat tagagaaaca aaagtccaga atgctaaggt tgccgctttc acttcctctc
121 accctttagc ccagaactgc tttgaataca ccaattgctg tggggcggct cgaggaagag
181 aagacaccag tgcctcagaa actgctcggt cagacggtga tagcgagcca cgcattcaca
241 gggccactgc tgctcacaga agcagtgagg atgatgccag gatgatgtct gcctcgcgcc
301 tggctgggac tctgatccca gccatggcct tcctctcctg cgtgagacca gaaagctggg
361 agccctgcgt ggagacttgg ccctaaacca cacagaagag ctggcatgaa acccagagct
421 ttcagactcc ggagcctcag cccttcaccc cgattccatt gcttcttgct aaatgctgcc
481 gttttatcac ggaggtggtt cctaatatta cttatcaatg catggagctg aatttctaca
541 aaatccccga caacctcccc ttctcaacca agaacctgga cctgagcttt aatcccctga
601 ggcatttagg cagctatagc ttcttcagtt tcccagaact gcaggtgctg gatttatcca
661 ggtgtgaaat ccagacaatt gaagatgggg catatcagag cctaagccac ctctctacct
721 taatattgac aggaaacccc atccagagtt tagccctggg agccttttct ggactatcaa
781 gtttacagaa gctggtggct gtggagacaa atctagcatc tctagagaac ttccccattg
841 gacatctcaa aactttgaaa gaacttaatg tggctcacaa tcttatccaa tctttcaaat
901 tacctgagta tttttctaat ctgaccaatc tagagcactt ggacctttcc agcaacaaga
961 ttcaaagtat ttattgcaca gacttgcggg ttctacatca aatgccccta ctcaatctct
1021 ctttagacct gtccctgaac cctatgaact ttatccaacc aggtgcattt aaagaaatta
1081 ggcttcataa gctgacttta agaaataatt ttgatagttt aaatgtaatg aaaacttgta
1141 ttcaaggtct ggctggttta gaagtccatc gtttggttct gggagaattt agaaatgaag
1201 gaaacttgga aaagtttgac aaatctgctc tagagggcct gtgcaatttg accattgaag
1261 aattccgatt agcatactta gactactacc tcgatgatat tattgactta tttaattgtt
1321 tgacaaatgt ttcttcattt tccctggtga gtgtgactat tgaaagggta aaagactttt
1381 cttataattt cggatggcaa catttagaat tagttaactg taaatttgga cagtttccca
1441 cattgaaact caaatctctc aaaaggctta ctttcacttc caacaaaggt gggaatgctt
1501 tttcagaagt tgatctacca agccttgagt ttctagatct cagtagaaat ggcttgagtt
1561 tcaaaggttg ctgttctcaa agtgattttg ggacaacctg cctaaagtat ttagatctga
1621 gcttcaatgg tgttattacc atgagttcaa acttcttggg cttagaacaa ctagaacatc
1681 tggatttcca gcattccaat ttgaaacaaa tgagtgagtt ttcagtattc ctatcactca
1741 gaaacctcat ttaccttgac atttctcata ctcacaccag agttgctttc aatggcatct
1801 tcaatggctt gtccagtctc gaagtcttga aaatggctgg caattctttc caggaaaact
1861 tccttccaga tatcttcaca gagctgagaa acttgacctt cctggacctc tctcagtgtc
1921 aactggagca gttgtctcca acagcattta actcactctc cagtcttcag gtactaaata
1981 tgagccacaa caacttcttt tcattggata cgtttcctta taagtgtctg aactccctcc
2041 aggttcttga ttacagtctc aatcacataa tgacttccaa aaaacaggaa ctacagcatt
2101 ttccaagtag tctagctttc ttaaatctta ctcagaatga ctttgcttgt acttgtgaac
2161 accagagttt cctgcaatgg atcaaggacc agaggcagct cttggtggaa gttgaacgaa
2221 tggaatgtgc aacaccttca gataagcagg gcatgcctgt gctgagtttg aatatcacct
2281 gtcagatgaa taagaccatc attggtgtgt cggtcctcag tgtgcttgta gtatctgttg
2341 tagcagttct ggtctataag ttctattttc acctgatgct tcttgctggc tgcataaagt
2401 atggtagagg tgaaaacatc tatgatgcct ttgttatcta ctcaagccag gatgaggact
2461 gggtaaggaa tgagctagta aagaatttag aagaaggggt gcctccattt cagctctgcc
2521 ttcactacag agactttatt cccggtgtgg ccattgctgc caacatcatc catgaaggtt
2581 tccataaaag ccgaaaggtg attgttgtgg tgtcccagca cttcatccag agccgctggt
2641 gtatctttga atatgagatt gctcagacct ggcagtttct gagcagtcgt gctggtatca
2701 tcttcattgt cctgcagaag gtggagaaga ccctgctcag gcagcaggtg gagctgtacc
2761 gccttctcag caggaacact tacctggagt gggaggacag tgtcctgggg cggcacatct
2821 tctggagacg actcagaaaa gccctgctgg atggtaaatc atggaatcca gaaggaacag
2881 tgggtacagg atgcaattgg caggaagcaa catctatctg aagaggaaaa ataaaaacct
2941 cctgaggcat ttcttgccca gctgggtcca acacttgttc agttaataag tattaaatgc
3001 tgccacatgt caggccttat gctaagggtg agtaattcca tggtgcacta gatatgcagg
3061 gctgctaatc tcaaggagct tccagtgcag
//