LOCUS AK290032 3730 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78430 complete cds, highly similar to Homo
sapiens sema domain, transmembrane domain (TM), and cytoplasmic
domain, (semaphorin) 6D (SEMA6D), transcript variant 4, mRNA.
ACCESSION AK290032
VERSION AK290032.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3730)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..3730
/clone="BRHIP3033488"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000422829"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 361..3582
/codon_start=1
/note="highly similar to Homo sapiens sema domain,
transmembrane domain (TM), and cytoplasmic domain,
(semaphorin) 6D (SEMA6D), transcript variant 4, mRNA"
/protein_id="BAF82721.1"
/transl_table=1
/translation="MRVFLLCAYILLLMVSQLRAVSFPEDDEPLNTVDYHYSRQYPVF
RGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEMPKTEVIPNKKLTWRSRQ
QDRENCAMKGKHKDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLSTLEYDGEEI
SGLARCPFDARQTNVALFADGKLYSATVADFLASDTVIYRSMGDGSALRTIKYDSKWI
KEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTS
FLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMD
DIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDETLSF
IKSHPLMDSAVPPIADEPWFTKTRVRYRLTAISVDHSAGPYQNYTVIFVGSEAGMVLK
VLAKTSPFSLNDSVLLEEIEAYNHAKCSAENEEDKKVISLQLDKDHHALYVAFSSCII
RIPLSRCERYGSCKKSCIASRDPYCGWLSQGSCGRVTPGMLAEGYEQDTEFGNTAHLG
DCHEILPTSTTPDYKIFGGPTSDMEVSSSSVTTMASIPEITPKVIDTWRPKLTSSRKF
VVQDDPNTSDFTDPLSGIPKGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVA
VYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSN
LLTSRKELPPNGDTKSMVMDHRGQPPELAALPTPESTPVPHQKTLQAMKSHSEKAHGH
GASRKETPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQNI
DHPLTKSSSKRDHRRSVDSRNTLNDLLKHLNDPNSNPKAIMGDIQMAHQNLMLDPMGS
MSEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRH
SISAMPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSS
YTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTPSVRPLNKYTY"
BASE COUNT 1019 a 923 c 814 g 974 t
ORIGIN
1 gcgccgggag ctgccgagtg cgtggaggga gccaggctcc ggctcgcctg atggattgac
61 ttggagatgg atcgaattac accatttgcc gtgcatcggt ttgttttgct cctgctctgt
121 cccgctgctg ctgctgctgc tgcaaggggt ggtggcgagt ttcaggattc tatcaaggaa
181 gccaagacct aaggagacag agggatatct atttttacaa tatttttctt tattttcttt
241 cttccttgcg cgtggcaagc tttttttttt ctttttcttt tttcttacca gcctcccccc
301 aatgaggtag ctcagtggca tttctgagca ggggccaccc tgacttcacc ttggcccacc
361 atgagggtct tcctgctttg tgcctacata ctgctgctga tggtttccca gttgagggca
421 gtcagctttc ctgaagatga tgaacccctt aatactgtcg actatcacta ttcaaggcaa
481 tatccggttt ttagaggacg cccttcaggc aatgaatcgc agcacaggct ggactttcag
541 ctgatgttga aaattcgaga cacactttat attgctggca gggatcaagt ttatacagta
601 aacttaaatg aaatgcccaa aacagaagta ataccaaaca agaaactgac atggcgatca
661 agacaacagg atcgagaaaa ctgtgctatg aaaggcaagc ataaagatga atgccacaac
721 tttatcaaag tatttgttcc aagaaacgat gagatggttt ttgtttgtgg taccaatgca
781 ttcaatccca tgtgtagata ctacaggttg agtaccttag aatatgatgg ggaagaaatt
841 agtggcctgg caagatgccc atttgatgcc agacaaacca atgttgccct ctttgctgat
901 gggaagctgt attctgccac agtggctgac ttcttggcca gcgataccgt tatttatcga
961 agcatgggtg atggatctgc ccttcgcaca ataaaatatg attccaaatg gataaaagag
1021 ccacactttc ttcatgccat agaatatgga aactatgtct atttcttctt tcgagaaatc
1081 gctgtcgaac ataataattt aggcaaggct gtgtattccc gcgtggcccg catatgtaaa
1141 aacgacatgg gtggttccca gcgggtcctg gagaaacact ggacttcatt tctaaaggct
1201 cggctgaact gttctgtccc tggagattcg tttttctact ttgatgttct gcagtctatt
1261 acagacataa tacaaatcaa tggcatcccc actgtggtcg gggtgtttac cacgcagctc
1321 aatagcatcc ctggttctgc tgtctgtgca tttagcatgg atgacattga aaaagtattc
1381 aaaggacggt ttaaggaaca gaaaactcca gattctgttt ggacagcagt tcccgaagac
1441 aaagtgccaa agccaaggcc tggctgttgt gcaaaacacg gccttgccga agcttataaa
1501 acctccatcg atttcccgga tgaaactctg tcattcatca aatctcatcc cctgatggac
1561 tctgccgttc cacccattgc tgatgagccc tggttcacaa agactcgggt caggtacaga
1621 ctgacggcca tctcagtgga ccattcagcc ggaccctacc agaactacac agtcatcttt
1681 gttggctctg aagctggcat ggtacttaaa gttctggcaa agaccagtcc tttctctttg
1741 aacgacagcg tattactgga agagattgaa gcctacaacc atgcaaagtg cagtgctgag
1801 aatgaggaag acaaaaaggt catctcatta cagttggata aagatcacca cgctttatat
1861 gtggcgttct ctagctgcat tatccgcatc cccctcagtc gctgtgagcg ttatggatca
1921 tgtaaaaagt cttgtattgc atctcgtgac ccgtattgtg gctggttaag ccagggatcc
1981 tgtggtagag tgaccccagg gatgcttgct gaaggatatg aacaagacac agaattcggc
2041 aacacagctc atctagggga ctgccatgaa attttgccta cttcaactac accagattac
2101 aaaatatttg gcggtccaac atctgacatg gaggtatctt catcttctgt taccacaatg
2161 gcaagtatcc cagaaatcac acctaaagtg attgatacct ggagacctaa actgacaagc
2221 tctcggaaat ttgtagttca agatgatcca aacacttctg attttactga tcctttatcg
2281 ggtatcccaa agggtgtacg atgggaagtc cagtctggag agtccaacca gatggtccac
2341 atgaatgtcc tcatcacctg tgtctttgct gcttttgttt tgggggcatt cattgcaggt
2401 gtggcagtat actgctatcg agacatgttt gttcggaaaa acagaaagat ccataaagat
2461 gcagagtccg cccagtcatg cacagactcc agtggaagtt ttgccaaact gaatggtctc
2521 tttgacagcc ctgtcaagga ataccaacag aatattgatt ctcctaaact gtatagtaac
2581 ctgctaacca gtcggaaaga gctaccaccc aatggagata ctaaatccat ggtaatggac
2641 catcgagggc aacctccaga gttggctgct cttcccactc ctgagtctac acccgtgcct
2701 caccagaaga ccctgcaggc catgaagagc cactcagaaa aggcccatgg ccatggagct
2761 tcaaggaaag aaacccctca gttttttccg tctagtccgc cacctcattc cccattaagt
2821 catgggcata tccccagtgc cattgttctt ccaaatgcta cccatgacta caacacgtct
2881 ttctcaaact ccaatgctca caaagctgaa aagaagcttc aaaacattga tcaccctctc
2941 acaaagtcat ccagtaagag agatcaccgg cgttctgttg attccagaaa taccctcaat
3001 gatctcctga agcatctgaa tgacccaaat agtaacccca aagccatcat gggagacatc
3061 cagatggcac accagaactt aatgctggat cccatgggat cgatgtctga ggtcccacct
3121 aaagtcccta accgggaggc atcgctatac tcccctcctt caactctccc cagaaatagc
3181 ccaaccaagc gagtggatgt ccccaccact cctggagtcc caatgacttc tctggaaaga
3241 caaagaggtt atcacaaaaa ttcctcccag aggcactcta tatctgctat gcctaaaaac
3301 ttaaactcac caaatggtgt tttgttatcc agacagccta gtatgaaccg tggaggatat
3361 atgcccaccc ccactggggc gaaggtggac tatattcagg gaacaccagt gagtgttcat
3421 ctgcagcctt ccctctccag acagagcagc tacaccagta atggcactct tcctaggacg
3481 ggactaaaga ggacgccgtc cttaaaacct gacgtgccac caaagccttc ctttgttcct
3541 caaaccccat ctgtcagacc actgaacaaa tacacatact aggcctcaag tgtgctattc
3601 ccatgtggct ttatcctgtc cgtgttgttg agaggatgat gttgtaaggg taccttaaaa
3661 caagagactc gcttgtattt taagagaacc aagtggccaa agaaactctt tctaactttg
3721 gcaacatcag
//