LOCUS AK290012 2927 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78203 complete cds, highly similar to Homo
sapiens cadherin 1, type 1, E-cadherin (epithelial) (CDH1), mRNA.
ACCESSION AK290012
VERSION AK290012.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2927)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2927
/clone="BRHIP3027392"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000422809"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 99..2747
/codon_start=1
/note="highly similar to Homo sapiens cadherin 1, type 1,
E-cadherin (epithelial) (CDH1), mRNA"
/protein_id="BAF82701.1"
/transl_table=1
/translation="MGPWSRSLSALLLLLQVSSWLCQEPEPCHPGFDAESYTFTVPRR
HLERGRVLGRVNFEDCTGRQRTAYFSLDTRFKVGTDGVITVKRPLRFHNPQIHFLVYA
WDSTYRKFSTKVTLNTVGHHHRPPPHQASVSGIQAELLTFPNSSPGLRRQKRDWVIPP
ISCPENEKGPFPKNLVQIKSNKDKEGKVFYSITGQGADTPPVGVFIIERETGWLKVTE
PLDRERIATYTLFSHAVSSNGNAVEDPMEILITVTDQNDNKPEFTQEVFKGSVMEGAL
PGTSVMEVTATDADDDVNTYNAAIAYTILSQDPELPDKNMFTINRNTGVISVVTTGLD
RESFPTYTLVVQAADLQGEGLSTTATAVITVTDTNDNPPIFNPTTYKGQVPENEANVV
ITTLKVTDADAPNTPAWEAVYTILNDDGGQFVVTTNPVNNDGILKTAKGLDFEAKQQY
ILHVAVTNVVPFEVSLTTSTATVTVDVLDVNEAPIFVPPEKRVEVSEDFGVGQEITSY
TAQEPDTFMEQKITYRIWRDTANWLEINPDTGAISTRAELDREDFEHVKNSTYTALII
ATDNGSPVATGTGTLLLILSDVNDNAPIPEPRTIFFCERNPKPQVINIIDADLPPNTS
PFTAELTHGASANWTIQYNDPTQESIILKPKMALEVGDYKINLKLMDNQNKDQVTTLE
VSVCDCEGAAGVCRKAQPVEAGLQIPAILGILGGILALLILILLLLLFLRRRAVVKEP
LLPPEDDTRDNVYYYDEEGGGEEDQDFDLSQLHRGLDARPEVTRNDVAPTLMSVPRYL
PRPANPDEIGNFIDENLKAADTDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSESDKD
QDYDYLNEWGNRFKKLADMYGGGEDD"
BASE COUNT 764 a 793 c 728 g 642 t
ORIGIN
1 gtgagcttgc ggaagtcagt tcagactcca gcccgctcca gcccggcccg acccgaccgc
61 acccggcgcc tgccctcgct cggcgtcccc ggccagccat gggcccttgg agccgcagcc
121 tctcggcgct gctgctgctg ctgcaggtct cctcttggct ctgccaggag ccggagccct
181 gccaccctgg ctttgacgcc gagagctaca cgttcacggt gccccggcgc cacctggaga
241 gaggccgcgt cctgggcaga gtgaattttg aagattgcac cggtcgacaa aggacagcct
301 atttttccct cgacacccga ttcaaagtgg gcacagatgg tgtgattaca gtcaaaaggc
361 ctctacggtt tcataaccca cagatccatt tcttggtcta cgcctgggac tccacctaca
421 gaaagttttc caccaaagtc acgctgaata cagtggggca ccaccaccgc cccccgcccc
481 atcaggcctc cgtttctgga atccaagcag aattgctcac atttcccaac tcctctcctg
541 gcctcagaag acagaagaga gactgggtta ttcctcccat cagctgccca gaaaatgaaa
601 aaggcccatt tcctaaaaac ctggttcaga tcaaatccaa caaagacaaa gaaggcaagg
661 ttttctacag catcactggc caaggagctg acacaccccc tgttggtgtc tttattattg
721 aaagagaaac aggatggctg aaggtgacag agcctctgga tagagaacgc attgccacat
781 acactctctt ctctcacgct gtgtcatcca acgggaatgc agttgaggat ccaatggaga
841 ttttgatcac ggtaaccgat cagaatgaca acaagcccga attcacccag gaggtcttta
901 aggggtctgt catggaaggt gctcttccag gaacctctgt gatggaggtc acagccacag
961 acgcggacga tgatgtgaac acctacaatg ccgccatcgc ttacaccatc ctcagccaag
1021 atcctgagct ccctgacaaa aatatgttca ccattaacag gaacacagga gtcatcagtg
1081 tggtcaccac tgggctggac cgagagagtt tccctacgta taccctggtg gttcaagctg
1141 ctgaccttca aggtgagggg ttaagcacaa cagcaacagc tgtgatcaca gtcactgaca
1201 ccaacgataa tcctccgatc ttcaatccca ccacgtacaa gggtcaggtg cctgagaacg
1261 aggctaacgt cgtaatcacc acactgaaag tgactgatgc tgatgccccc aataccccag
1321 cgtgggaggc tgtatacacc atattgaatg atgatggtgg acaatttgtc gtcaccacaa
1381 atccagtgaa caacgatggc attttgaaaa cagcaaaggg cttggatttt gaggccaagc
1441 agcagtacat tctacacgta gcagtgacga atgtggtacc ttttgaggtc tctctcacca
1501 cctccacagc caccgtcacc gtggatgtgc tggatgtgaa tgaagccccc atctttgtgc
1561 ctcctgaaaa gagagtggaa gtgtccgagg actttggcgt gggccaggaa atcacatcct
1621 acactgccca ggagccagac acatttatgg aacagaaaat aacatatcgg atttggagag
1681 acactgccaa ctggctggag attaatccgg acactggtgc catttccact cgggctgagc
1741 tggacaggga ggattttgag cacgtgaaga acagcacgta cacagcccta atcatagcta
1801 cagacaatgg ttctccagtt gctactggaa cagggacact tctgctgatc ctgtctgatg
1861 tgaatgacaa cgcccccata ccagaacctc gaactatatt cttctgtgag aggaatccaa
1921 agcctcaggt cataaacatc attgatgcag accttcctcc caatacatct cccttcacag
1981 cagaactaac acacggggcg agtgccaact ggaccattca gtacaacgac ccaacccaag
2041 aatctatcat tttgaagcca aagatggcct tagaggtggg tgactacaaa atcaatctca
2101 agctcatgga taaccagaat aaagaccaag tgaccacctt agaggtcagc gtgtgtgact
2161 gtgaaggggc cgctggcgtc tgtaggaagg cacagcctgt cgaagcagga ttgcaaattc
2221 ctgccattct ggggattctt ggaggaattc ttgctttgct aattctgatt ctgctgctct
2281 tgctgtttct tcggaggaga gcggtggtca aagagccctt actgccccca gaggatgaca
2341 cccgggacaa cgtttattac tatgatgaag aaggaggcgg agaagaggac caggactttg
2401 acttgagcca gctgcacagg ggcctggacg ctcggcctga agtgactcgt aacgacgttg
2461 caccaaccct catgagtgtc ccccggtatc ttccccgccc tgccaatccc gatgaaattg
2521 gaaattttat tgatgaaaat ctgaaagcgg ctgatactga ccccacagcc ccgccttatg
2581 attctctgct cgtgtttgac tatgaaggaa gcggttccga agctgctagt ctgagctccc
2641 tgaactcctc agagtcagac aaagaccagg actatgacta cttgaacgaa tggggcaatc
2701 gcttcaagaa gctggctgac atgtacggag gcggcgagga cgactagggg actcgagaga
2761 ggcgggcccc agacccatgt gctgggaaat gcagaaatca cgttgctggt ggtttttcag
2821 ctcccttccc ttgagatgag tttctgggga aaaaaaagag actggttagt gatgcagtta
2881 gtatagcttt atactctctc cactttatag ctctaataag tttgtgt
//