LOCUS AK289980 4456 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77479 complete cds, highly similar to Homo
sapiens protocadherin 17, mRNA.
ACCESSION AK289980
VERSION AK289980.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4456)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4456
/clone="BRHIP3012918"
/clone_lib="BRHIP3"
/db_xref="H-InvDB:HIT000422777"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="hippocampus"
CDS 736..4215
/codon_start=1
/note="highly similar to Homo sapiens protocadherin 17,
mRNA"
/protein_id="BAF82669.1"
/transl_table=1
/translation="MYLSICCCFLLWAPALTLKNLNYSVPEEQGAGTVIGNIGRDARL
QPGLPPAERGGGGRSKSGSYRVLENSAPHLLDVDADSGLLYTKQRIDRESLCRHNAKC
QLSLEVFANDKEICMIKVEIQDINDNAPSFSSDQIEMDISENAAPGTRFPLTSAHDPD
AGENGLRTYLLTRDDHGLFGLDVKSRGDGTKFPELVIQKALDREQQNHHTLVLTALDG
GEPPRSATVQINVKVIDSNDNSPVFEAPSYLVELPENAPLGTVVIDLNATDADEGPNG
EVLYSFSSYVPDRVRELFSIDPKTGLIRVKGNLDYEENGMLEIDVQARDLGPNPIPAH
CKVTVKLIDRNDNAPSIGFVSVRQGALSEAAPPGTVIALVRVTDRDSGKNGQLQCRVL
GGGGTGGGGGLGGPGGSVPFKLEENYDNFYTVVTDRPLDRETQDEYNVTIVARDGGSP
PLNSTKSFAIKILDENDNPPRFTKGLYVLQVHENNIPGEYLGSVLAQDPDLGQNGTVS
YSILPSHIGDVSIYTYVSVNPTNGAIYALRSFNFEQTKAFEFKVLAKDSGAPAHLESN
ATVRVTVLDVNDNAPVIVLPTLQNDTAELQVPRNAGLGYLVSTVRALDSDFGESGRLT
YEIVDGNDDHLFEIDPSSGEIRTLHPFWEDVTPVVELVVKVTDHGKPTLSAVAKLIIR
SVSGSLPEGVPRVNGEQHHWDMSLPLIVTLSTISIILLAAMITIAVKCKRENKEIRTY
NCRIAEYSHPQLGGGKGKKKKINKNDIMLVQSEVEERNAMNVMNVVSSPSLATSPMYF
DYQTRLPLSSPRSEVMYLKPASNNLTVPQGHAGCHTSFTGQGTNASETPATRMSIIQT
DNFPAEPNYMGSRQQFVQSSSTFKDPERASLRDSGHGDSDQADSDQDTNKGSCCDMSV
REALKMKTTSTKSQPLEQEPEECVNCTDECRVLGHSDRCWMPQFPAANQAENADYRTN
LFVPTVEANVETETYETVNPTGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQ
EVPSASSSPTKACIEPCTSTKGSLDGCEAKPGALAEASSQYLPTDSQYLSPSKQPRDP
PFMASDQMARVFADVHSRASRDSSEMGAVLEQLDHPNRDLGRESVDAEEVVREIDKLL
QDCRGNDPVAVRK"
BASE COUNT 1046 a 1346 c 1212 g 852 t
ORIGIN
1 agatgcagtc cgccgccgcc gctgcctcag ccagcaatgc aagattagat ctctaaatgc
61 agcaaaacac tgcctgaaaa cagaccggcc cgcgcagcaa gcagacattt cacggtgcgc
121 tggggaagct tcaaaatata tctgtgactc tgtcttcgtt gctcttcatc cccatcaatt
181 tcatcacggg aggcgagcag caagtaagaa tttcactttc ggatctgcct agagacacac
241 ctccctgctc cctcccccac tcgatgtgaa gagtattccg gagtctccgg gcgggagtag
301 atttgcagca ccctagcggg agcgaggaaa acctactgat tctttagctc attatcatct
361 ctcccagacg agatttcctt cttatcgcct gcctcatcgc tcaagtttga gcctcccgaa
421 gtccgggcgg gagagacgaa acccctggct cacccccagc cgcaggaagc caccgccttg
481 ctccaagccc ctgcagctct gctgcaccgc agcttctcac ccagtgcgga tgctgtagat
541 caacaggttc agggaacttg agcagaataa ggagagacca ccgggtgccg cagctcgggt
601 gcagagggaa aaaaggaccc atagacttgt ggctcgcgtc gcgcgcgcac gctgcgccag
661 ggccccaggc tggcgcgcac tccctctctg gctcctccag tccgattgct cctgccccca
721 ccttacaggt ctgggatgta cctttccatc tgttgctgct ttcttctatg ggcccctgcc
781 ctcactctca agaacctcaa ctactccgtg ccggaggagc aaggggccgg cacggtgatc
841 gggaacatcg gcagggatgc tcgactgcag cctgggcttc cgcctgcaga gcgcggcggc
901 ggagggcgca gcaagtcggg tagctaccgg gtgctggaga actccgcacc gcacctgctg
961 gacgtggacg cagacagcgg gctcctctac accaagcagc gcatcgaccg cgagtccctg
1021 tgccgccaca atgccaagtg ccagctgtcc ctcgaggtgt tcgccaacga caaggagatc
1081 tgcatgatca aggtagagat ccaggacatc aacgacaacg cgccctcctt ctcctcggac
1141 cagatcgaaa tggacatctc ggagaacgct gctccgggca cccgcttccc cctcaccagc
1201 gcacatgacc ccgacgccgg cgagaatggg ctccgcacct acctgctcac gcgcgacgat
1261 cacggcctct ttggactgga cgttaagtcc cgcggcgacg gcaccaagtt cccagaactg
1321 gtcatccaga aggctctgga ccgcgagcaa cagaatcacc atacgctcgt gctgactgcc
1381 ctggacggtg gcgagcctcc acgttccgcc accgtacaga tcaacgtgaa ggtgattgac
1441 tccaacgaca acagcccggt cttcgaggcg ccatcctact tggtggaact gcccgagaac
1501 gctccgctgg gtacagtggt catcgatctg aacgccaccg acgccgatga aggtcccaat
1561 ggtgaagtgc tctactcttt cagcagctac gtgcctgacc gcgtgcggga gctcttctcc
1621 atcgacccca agaccggcct aatccgtgtg aagggcaatc tggactatga ggaaaacggg
1681 atgctggaga ttgacgtgca ggcccgagac ctggggccta accctatccc agcccactgc
1741 aaagtcacgg tcaagctcat cgaccgcaac gacaatgcgc cgtccatcgg tttcgtctcc
1801 gtgcgccagg gggcgctgag cgaggccgcc cctcccggca ccgtcatcgc cctggtgcgg
1861 gtcactgacc gggactctgg caagaacgga cagctgcagt gtcgggtcct aggcggagga
1921 gggacgggcg gcggcggggg cctgggcggg cccgggggtt ccgtcccctt caagcttgag
1981 gagaactacg acaacttcta cacggtggtg actgaccgcc cgctggaccg cgagacacaa
2041 gacgagtaca acgtgaccat cgtggcgcgg gacgggggct ctcctcccct caactccacc
2101 aagtcgttcg cgatcaagat tctagacgag aacgacaacc cgcctcggtt caccaaaggg
2161 ctctacgtgc ttcaggtgca cgagaacaac atcccgggag agtacctggg ctctgtgctc
2221 gcccaggatc ccgacctggg ccagaacggc accgtatcct actctatcct gccctcgcac
2281 atcggcgacg tgtctatcta cacctatgtg tctgtgaatc ccacgaacgg ggccatctac
2341 gccctgcgct cctttaactt cgagcagacc aaggcttttg agttcaaggt gcttgctaag
2401 gactcggggg cgcccgcgca cttggagagc aacgccacgg tgagggtgac agtgctagac
2461 gtgaatgaca acgcgccagt gatcgtgctc cccacgctgc agaacgacac cgcggagctg
2521 caggtgccgc gcaacgctgg cctgggctat ctggtgagca ctgtgcgcgc cctagacagc
2581 gacttcggcg agagcgggcg tctcacctac gagatcgtgg acggcaacga cgaccacctg
2641 tttgagatcg acccgtccag cggcgagatc cgcacgctgc accctttctg ggaggacgtg
2701 acgcccgtgg tggagctggt ggtgaaggtg accgaccacg gcaagcctac cctgtccgca
2761 gtggccaagc tcatcatccg ctcggtgagc ggatcccttc ccgagggggt accacgggtg
2821 aatggcgagc agcaccactg ggacatgtcg ctgccgctca tcgtgactct gagcactatc
2881 tccatcatcc tcctagcggc catgatcacc atcgccgtca agtgcaagcg cgagaacaag
2941 gagatccgca cttacaactg ccgcatcgcc gagtacagcc acccgcagct gggtgggggc
3001 aagggcaaga agaagaagat caacaaaaat gatatcatgc tggtgcagag cgaagtggag
3061 gagaggaacg ccatgaacgt catgaacgtg gtgagcagcc cctccctggc cacctccccc
3121 atgtacttcg actaccagac ccgcctgccc ctcagctcgc cccggtcgga ggtgatgtat
3181 ctcaaaccgg cctccaacaa cctgactgtc cctcaggggc acgcgggctg ccacaccagc
3241 ttcaccggac aagggactaa tgcaagcgag acccctgcca ctcggatgtc cataattcag
3301 acagacaatt ttcccgcaga gcccaattac atgggcagca ggcagcagtt tgttcaaagt
3361 agctccacgt ttaaggaccc agaaagagcc agcctgagag acagtgggca cggggacagt
3421 gatcaggctg acagtgacca agacactaac aaaggctcct gctgtgacat gtctgttagg
3481 gaggcactca agatgaaaac tacttcaact aaaagccaac cacttgaaca agaaccagaa
3541 gagtgtgtta attgcacaga tgaatgccga gtgcttggtc attctgacag gtgctggatg
3601 ccacagttcc ctgcagccaa tcaggctgaa aatgcagatt accgcacaaa tctctttgta
3661 cctacagttg aagctaatgt tgagactgag acttacgaaa ctgtgaatcc cactgggaaa
3721 aagacttttt gtacatttgg aaaagacaag cgagagcaca ctattctcat tgccaacgtt
3781 aaaccttatt taaaagccaa acgtgccctg agccctctcc tccaagaggt cccctcagca
3841 tcaagcagcc caaccaaggc gtgcatcgag ccttgcacct caacaaaagg ctccctggat
3901 ggctgtgaag caaaaccagg agccctggct gaagcaagca gtcagtactt gcccactgac
3961 agtcaatatc tgtcacctag taagcaacca agagaccctc ccttcatggc ttccgatcag
4021 atggcaaggg tctttgcaga tgtgcattcc agagccagcc gggattccag tgagatgggt
4081 gctgttcttg agcagcttga ccaccccaac agggatctgg gcagagagtc tgtggatgca
4141 gaggaagttg tgagagaaat tgataagctt ttgcaagact gccggggaaa cgaccctgtg
4201 gctgtgagaa agtgaaaaaa gaaaaaaaaa aggcattggc attttcttgt ctcttctgtt
4261 gatttaaaaa tgatccctcc tggtgataac ccattttaca gggatgaaga aagaccaatg
4321 ctgctttaag gcttttagtg aacatctgaa gtgcccacaa gtatgttctt tccactgctg
4381 atttcttttt cagagataac aatggtttcg ttttgaccaa acttgtatta ggacagaatt
4441 aatgatgctt aaagag
//