LOCUS AK289872 1890 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78011 complete cds, highly similar to Homo
sapiens papillary renal cell carcinoma (translocation-associated)
(PRCC), transcript variant 1, mRNA.
ACCESSION AK289872
VERSION AK289872.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1890)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1890
/clone="BRCAN2012638"
/clone_lib="BRCAN2"
/db_xref="H-InvDB:HIT000422669"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="caudate nucleus"
CDS 231..1706
/codon_start=1
/note="highly similar to Homo sapiens papillary renal
cell carcinoma (translocation-associated) (PRCC),
transcript variant 1, mRNA"
/protein_id="BAF82561.1"
/transl_table=1
/translation="MSLVAYASSDESEPDEAEPEPEEEEAVAPTSGPALGGLFASLPA
PKGPALLPPPPQMLAPAFPPPLLLPPPTGDPRLQPPPPLPFGLGGFPPPPGVSPAEAA
GVGEGLGLGLPSPRGPGLNLPPPIGGAGPPLGLSKPKKRKEPVKIAAPELHKGDSDSE
EDEPTKKKTILQGSSEGTGLSALLPQPKNLTVKETNRLLLPHAFSRKPSDGSPDTKPS
RLASKTKTSSLAPVVGTTTTTPSPSAIKAAAKSAALQVTKQITQEEDDSDEEVAPENF
FSLPEKAEPPGVEPYPYPIPTVPEELPPGTEPEPAFQDDAANAPLEFKMAAGSSGAPW
MPKPGDDYSYNQFSTYGDANAAGAYYQDYYSGGYYPAQDPALVPPQEIAPDASFIDDE
AFKRLQGKRNRGREEINFVEIKGDDQLSGAQQWMTKSLTEEKTMKSFSKKKGEQPTGQ
QRRKHQITYLIHQAKERELELKNTWSENKLSRRQTQAKYGF"
BASE COUNT 421 a 587 c 517 g 365 t
ORIGIN
1 agctgtgtgt agttgcccgg gactaggagc ttaagtgaag aggtacgcct tgttcggtgg
61 aaatcagccg tagccatgag tttctgccgg ggctagccct agagtacgga gcaggcggac
121 ttttcggttc cccgccccgc caggtggcgg ggcctactag gcctccgggc atccccggtc
181 tcaagtaggc ctcatctgcc ggcaagggcg cccgaaacgc gggaggcgcc atgtcgctgg
241 ttgcttacgc cagcagcgat gagagcgagc cggatgaggc tgagcccgag ccggaggaag
301 aggaggcggt ggctcctaca tctgggcccg ctttaggggg cttgttcgct tctctccctg
361 cgcccaaggg tccggccttg ctgcctcccc cccctcagat gctggcgcca gcctttcccc
421 cgccgctgtt gcttccccca cccaccggag accccaggct tcagcctcct ccccccttgc
481 ccttcggcct gggaggcttc cccccacctc caggcgtgag cccggctgaa gcggcgggag
541 ttggggaggg actgggattg gggttgccct cgccccgagg ccctggcctc aatctgcccc
601 ctccaattgg cggtgccggt cccccgctgg ggctttccaa gccaaagaag aggaaagagc
661 ccgtgaagat cgcggcgccg gagttgcata agggagattc agattctgag gaagatgaac
721 ccacaaagaa gaaaactatc cttcagggat ccagtgaggg gactggtttg tctgccttgc
781 ttccccaacc taaaaacctg actgtgaaag agactaacag gttgctcctg ccccatgcct
841 tctcccgcaa accctcggat ggctcccctg atactaagcc ctccagactg gcttctaaga
901 ccaagacttc ctctcttgcc cctgttgtgg gcaccacaac caccactccg tcgccctctg
961 ctatcaaggc tgctgccaag agtgctgccc tgcaggtgac aaagcagatc acgcaggaag
1021 aagacgacag tgatgaggaa gtagcccccg aaaacttttt ctccctccct gaaaaggctg
1081 agccacctgg agttgagcca tacccttacc ccatccccac tgtccctgaa gagctgcctc
1141 caggcacgga accagagccg gctttccagg acgatgcagc caatgccccc cttgaattca
1201 agatggcagc aggttcaagt ggggcccctt ggatgcctaa gcctggggac gactacagct
1261 acaatcagtt ttccacatat ggcgatgcca atgccgctgg tgcttattat caggattatt
1321 acagtggtgg ctactatcct gcacaggacc cggccctggt ccccccccag gaaattgccc
1381 cagatgcctc cttcatcgat gacgaagcat ttaagcggct gcagggcaag aggaaccgag
1441 ggagagaaga aatcaacttt gtggagatca aaggtgatga ccagctcagt ggggcccagc
1501 aatggatgac taagtcattg acagaagaga aaaccatgaa gtcattcagc aaaaagaaag
1561 gtgagcagcc aacaggccag cagcggcgga aacaccagat cacatatctt attcatcagg
1621 ccaaggagcg ggagctggaa ctgaagaaca cctggtcaga gaacaagctc agccgccgtc
1681 agacccaagc caaatatgga ttctagggct ctggaactga ttgctcccag gatctcctgc
1741 cagcccagct ggcctggccc ccagcttcac ctctgggacc ccagctgctc taagcccagg
1801 atctctttcc ccaaggaccc agccctcgcc tctgcgagaa tgaacatatt tgatagattt
1861 ttcttaacaa gttagaaaat tcagctcctt
//