LOCUS AK289827 1446 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77966 complete cds, highly similar to Homo
sapiens LIM homeobox 6 (LHX6), transcript variant 1, mRNA.
ACCESSION AK289827
VERSION AK289827.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1446)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1446
/clone="BRAWH3037382"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000422624"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 110..1201
/codon_start=1
/note="highly similar to Homo sapiens LIM homeobox 6
(LHX6), transcript variant 1, mRNA"
/protein_id="BAF82516.1"
/transl_table=1
/translation="MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQASP
CTPSTPSVCSPPSAASSVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRT
SLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACF
SCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQDSQPKP
AKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKK
HTPQHPVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRL
PYTAPPVHLKADMDGPLSNRGEKVILFQY"
BASE COUNT 274 a 523 c 414 g 235 t
ORIGIN
1 gttcggcgcc ggtttatata acaggcgcgg ggaggcgctg ggctcaggct gtgcggagcc
61 agttcagcag ccgccgccgc ctgcgttccc tccccccctc ccccaggtga tggcccagcc
121 agggtccggc tgcaaagcga ccacccgctg tcttgaaggg accgcgccgc ccgccatggc
181 tcagtctgac gccgaggccc tggcaggagc tctggacaag gacgagggtc aggcctcccc
241 atgtacgccc agcacgccat ctgtctgctc accgccctct gccgcctcct ccgtgccgtc
301 tgcaggcaag aacatctgct ccagctgcgg cctcgagatc ctggaccgat atctgctcaa
361 ggtcaacaac ctcatctggc acgtgcggtg cctcgagtgc tccgtgtgtc gcacgtcgct
421 gaggcagcag aacagctgct acatcaagaa caaggagatc ttctgcaaga tggactactt
481 cagccgattc gggaccaagt gtgcccggtg cggccgacag atctacgcca gcgactgggt
541 gcggagagct cgcggcaacg cctaccacct ggcctgcttc gcctgcttct cgtgcaagcg
601 ccagctgtcc actggtgagg agttcggcct ggtcgaggag aaggtgctct gccgcatcca
661 ctacgacacc atgattgaga acctcaagag ggccgccgag aacgggaacg gcctcacgtt
721 ggagggggca gtgccctcgg aacaggacag tcaacccaag ccggccaagc gcgcgcggac
781 gtccttcacc gcggaacagc tgcaggttat gcaggcgcag ttcgcgcagg acaacaaccc
841 cgacgctcag acgctgcaga agctggcgga catgacgggc ctcagccgga gagtcatcca
901 ggtgtggttt caaaactgcc gggcgcgtca taaaaagcac acgccgcaac acccagtgcc
961 gccctcgggg gcgcccccgt cccgccttcc ctccgccctg tccgacgaca tccactacac
1021 cccgttcagc agccccgagc gggcgcgcat ggtcaccctg cacggctaca ttgagagtca
1081 ggtacagtgc gggcaggtgc actgccggct gccttacacc gcaccccccg tccacctcaa
1141 agccgatatg gatgggccgc tctccaaccg gggtgagaag gtcatccttt ttcagtacta
1201 acgctgccgg cacttccgca tctgcccgtg ggcgccccac agctgcccct cagccgctga
1261 gatccagtgt ccaagctgcg gccaggagtc cacccacctc cgcatccacc cccgtccgcc
1321 atcctgccca ccaccaggtc ggttcccgag gcctggcctt tccctctcct gctgagaacc
1381 agaacccacc aggagcacca cagagtcctc ctcttggaag gcagaactcc ctgaaatctg
1441 gaatca
//