LOCUS AK289798 2981 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ76750 complete cds, highly similar to Homo
sapiens calsyntenin 1 (CLSTN1), transcript variant 2, mRNA.
ACCESSION AK289798
VERSION AK289798.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2981)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2981
/clone="BRAWH3029350"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000422595"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 2..2917
/codon_start=1
/note="highly similar to Homo sapiens calsyntenin 1
(CLSTN1), transcript variant 2, mRNA"
/protein_id="BAF82487.1"
/transl_table=1
/translation="MLRRPAPALAPAARLLLAGLLCGGGVWAARVNKHKPWLEPTYHG
IVTENDNTVLLDPPLIALDKDAPLRFAGEICGFKIHGQNVPFDAVVVGKSTGEGVIRS
KEKLDCELQKDYSFTIQAYDCGKGPDGTNVKKSHKATVHIQVNDVNEYAPVFKEKSYK
ATVIEGKQYDSILRVEAVDADCSPQFSQICSYEIITPDVPFTVDKDGYIKNTEKLNYG
KEHQYKLTVTAYDCGKKRATEDVLVKISIKPTCTPGWQGWNNRIEYEPGTGALAVFPN
IHLETCDEPVASVQATVELETSHIGKGCDRDTYSEKSLHRLCGAAAGTAELLPSPSGS
LNWTMGLPTDNGHDSDQVFEFNGTQAVRIPDGVVSVSPKEPFTISVWMRHGPFGRKKE
TILCSSDKTDMNRHHYSLYVHGCRLIFLFRQDPSEEKKYRPAEFHWKLNQVCDEEWHH
YVLNVEFPSVTLYVDGTSHEPFSVTEDYPLHPSKIETQLVVGACWQEFSGVENDNETE
PVTVASAGGDLHMTQFFRGNLAGLTLRSGKLADKRVIDCLYTCKEGLDLQVLEDSGRG
VQIQAHPSQLVLTLEGEDLGELDKAMQHISYLNSRQFPTPGIRRLKITSTIKCFNEAT
CISVPPVDGYVMVLQPEEPKISLSGVHHFARAASEFESSEGVFLFPELRIISTITREV
EPEGDGAEDPTVQESLVSEEIVHDLDTCEVTVEGEELNHEQESLEVDMARLQQKGIEV
SSSELGMTFTGVDTMASYEEVLHLLRYRNWHARSLLDRKFKLICSELNGRYISNEFKV
EVNVIHTANPMEHANHMAAQPQFVHPEHRSFVDLSGHNLANPHPFAVVPSTATVVIVV
CVSFLVFMIILGVFRIRAAHRRTMRDQDTGKENEMDWDDSALTITVNPMETYEDQHSS
EEEEEEEEEEESEDGEEEDDITSAESESSEEEEGEQGDPQNATRQQQLEWDDSTLSY"
BASE COUNT 724 a 818 c 866 g 573 t
ORIGIN
1 gatgctgcgc cgccccgctc ccgcgctggc cccggccgcc cggctgctgc tggccgggct
61 gctgtgcggc ggcggggtct gggccgcgcg agttaacaag cacaagccct ggctggagcc
121 cacctaccac ggcatagtca cagagaacga caacaccgtg ctcctcgacc ccccactgat
181 cgcgctggat aaagatgcgc ctctgcgatt tgcaggtgag atttgtggat ttaaaattca
241 cgggcagaat gtcccctttg atgcagtggt agtgggtaaa tccactggtg agggagtcat
301 tcgctccaaa gagaaactgg actgtgagct gcagaaagac tattcattca ccatccaggc
361 ctatgattgt gggaagggac ctgatggcac caacgtgaaa aagtctcata aagcaactgt
421 tcatattcag gtgaacgacg tgaatgagta cgcgcccgtg ttcaaggaga agtcctataa
481 agccacggtc atcgagggga agcagtacga cagcattttg agggtggagg ccgtggatgc
541 cgactgctcc cctcagttca gccagatttg cagctacgaa atcatcactc cagacgtgcc
601 ctttactgtt gacaaagatg gttatataaa aaacacagag aaattaaact acgggaaaga
661 acatcaatat aagctgaccg tcactgccta tgactgtggg aagaaaagag ccacagaaga
721 tgttttggtg aagatcagca ttaagcccac ctgcacccct gggtggcaag gatggaacaa
781 caggattgag tatgagccgg gcaccggcgc gttggccgtc tttccaaata tccacctgga
841 gacatgtgac gagccagtcg cctcagtaca ggccacagtg gagctagaaa ccagccacat
901 agggaaaggc tgcgaccgag acacctactc agagaagtcc ctccaccggc tctgtggtgc
961 ggccgcgggc actgccgagc tgctgccatc cccgagtgga tccctcaact ggaccatggg
1021 cctgcccacc gacaatggcc acgacagcga ccaggtgttt gagttcaacg gcacccaggc
1081 agtgaggatc ccggatggcg tcgtgtcggt cagccccaaa gagccgttca ccatctcggt
1141 gtggatgaga catgggccat tcggcaggaa gaaggagaca attctttgca gttctgataa
1201 aacagatatg aatcggcacc actactccct ctatgtccac gggtgccggc tgatcttcct
1261 cttccgtcag gatccttctg aggagaagaa atacagacct gcagagttcc actggaagtt
1321 gaatcaggtc tgtgatgagg aatggcacca ctacgtcctc aatgtagaat tcccgagtgt
1381 gactctctat gtggatggca cgtcccacga gcccttctct gtgactgagg attacccgct
1441 ccatccatcc aagatagaaa ctcagctcgt ggtgggggct tgctggcaag agttttcagg
1501 agttgaaaat gacaatgaaa ctgagcctgt gactgtggcc tctgcaggtg gcgacctgca
1561 catgacccag tttttccgag gcaatctggc tggcttaact ctccgttccg ggaaactcgc
1621 ggataagagg gtgatcgact gtctgtatac ctgcaaggag gggctggacc tgcaggtcct
1681 cgaagacagt ggcagaggcg tgcagatcca agcacacccc agccagttgg tattgacctt
1741 ggagggagaa gacctcgggg aattggataa ggccatgcag cacatctcgt acctgaactc
1801 ccggcagttc cccacgcccg gaattcgcag actcaaaatc accagcacaa tcaagtgttt
1861 taacgaggcc acctgcattt cggtcccccc ggtagatggc tacgtgatgg ttttacagcc
1921 cgaggagccc aagatcagcc tgagtggcgt ccaccatttt gcccgagcag cttctgaatt
1981 tgaaagctca gaaggggtgt tccttttccc tgagcttcgc atcatcagca ccatcacgag
2041 agaagtggag cctgaagggg atggggctga ggaccccaca gttcaagaat cactggtgtc
2101 cgaggagatc gtgcacgacc tggatacctg tgaggtcacg gtggagggag aggagctgaa
2161 ccacgagcag gagagcctgg aggtggacat ggcccgcctg cagcagaagg gcattgaagt
2221 gagcagctct gaactgggca tgaccttcac aggcgtggac accatggcca gctacgagga
2281 ggttttgcac ctgctgcgct atcggaactg gcatgccagg tccttgcttg accggaagtt
2341 taagctcatc tgctcagagc tgaatggccg ctacatcagc aacgaattta aggtggaggt
2401 gaatgtaatc cacacggcca accccatgga acacgccaac cacatggctg cccagccaca
2461 gttcgtgcac ccggaacacc gctcctttgt tgacctgtca ggccacaacc tggccaaccc
2521 ccacccgttc gcagtcgtcc ccagcactgc gacagttgtg atcgtggtgt gcgtcagctt
2581 cctggtgttc atgattatcc tgggggtatt tcggatccgg gccgcacatc ggcggaccat
2641 gcgggatcag gacaccggga aggagaacga gatggactgg gacgactctg ccctgaccat
2701 caccgtcaac cccatggaga cctatgagga ccagcacagc agtgaggagg aggaggaaga
2761 ggaagaggaa gaggaaagcg aggacggcga agaagaggat gacatcacca gcgccgagtc
2821 ggagagcagc gaggaggagg agggggagca gggcgacccc cagaacgcaa cccggcagca
2881 gcagctggag tgggatgact ccaccctcag ctactgaccc gtgcccccgg ccacctcggt
2941 ttctgctttc gaagactctg ctgccatccg ttctcccagt c
//