LOCUS AK289784 4545 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ77252 complete cds, highly similar to Homo
sapiens protein tyrosine phosphatase, receptor type, O (PTPRO),
transcript variant 1, mRNA.
ACCESSION AK289784
VERSION AK289784.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4545)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..4545
/clone="BRAWH3024527"
/clone_lib="BRAWH3"
/db_xref="H-InvDB:HIT000422581"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 216..3866
/codon_start=1
/note="highly similar to Homo sapiens protein tyrosine
phosphatase, receptor type, O (PTPRO), transcript variant
1, mRNA"
/protein_id="BAF82473.1"
/transl_table=1
/translation="MGHLPTGIHGARRLLPLLWLFVLFKNATAFHVTVQDDNNIVVSL
EASDVISPASVYVVKITGESKNYFFEFEEFNSTLPPPVIFKASYHGLYYIITLVVVNG
NVVTKPSRSITVLTKPLPVTSVSIYDYKPSPETGVLFEIHYPEKYNVFTRVNISYWEG
KDFRTMLYKDFFKGKTVFNHWLPGMCYSNITFQLVSEATFNKSTLVEYSGVSHEPKQH
RTAPYPPQNISVRIVNLNKNNWEEQSGNFPEESFMRSQDTIGKEKLFHFTEETPEIPS
GNISSGWPDFNSSDYETTSQPYWWDSASAAPESEDEFVSVLPMEYENNSTLSETEKST
SGSFSFFPVQMILTWLPPKPPTAFDGFHIHIEREENFTEYLMVDEEAHEFVAELKEPG
RYKLSVTTFSSSGSCETRKSQSAKSLSFYISPSGEWIEELTEKPQHVSVHVLSSTTAL
MSWTSSQENYNSTIVSVVSLTCQKQKESQRLEKQYCTQVNSSKPIIENLVPGAQYQVV
IYLRKGPLIGPPSDPVTFAIVPTGIKDLMLYPLGPTAVVLSWTRPYLGVFRKYVVEMF
YFNPATMTSEWTTYYEIAATVSLTASVRIANLLPAWYYNFRVTMVTWGDPELSCCDSS
TISFITAPVAPEITSVEYFNSLLYISWTYGDDTTDLSHSRMLHWMVVAEGKKKIKKSV
TRNVMTAILSLPPGDIYNLSVTACTERGSNTSMLRLVKLEPAPPKSLFAVNKTQTSVT
LLWVEEGVADFFEVFCQQVGSSQKTKLQEPVAVSSHVVTISSLLPATAYNCSVTSFSH
DSPSVPTFIAVSTMVTEMNPNVVVISVLAILSTLLIGLLLVTLIILRKKHLQMARECG
AGTFVNFASLERDGKLPYNWRRSIFAFLTLLPSCLWTDYLLAFYINPWSKNGLKKRKL
TNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNIL
PYDFSRVRLVSMNEEEGADYINANYIPGYNSPQEYIATQGPLPETRNDFWKMVLQQKS
QIIVMLTQCNEKRRVKCDHYWPFTEEPIAYGDITVEMISEEEQDDWACRHFRINYADE
MQDVMHFNYTAWPDHGVPTANAAESILQFVHMVRQQATKSKGPMIIHCSAGVGRTGTF
IALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMKKKQQFC
ISDVIYENVSKS"
BASE COUNT 1289 a 1019 c 1024 g 1213 t
ORIGIN
1 attaaagaac agcagcgcct ggcacgttct tggaggaccc cgggcgcaga ggaggaaagg
61 gagcaggcgc agggggactg gaaaggcagc atgcgctcgc caggagcaac ctcggcgccc
121 agggtctgag gctgcagccc cagttcgcca ttgtgagccg ccgccggggg agtccgctag
181 cgcagccgtg cccccgagtc cccgtccgcg cagcgatggg gcacctgccc acggggatac
241 acggcgcccg ccgcctcctg cctctgctct ggctctttgt gctgttcaag aatgctacag
301 ctttccatgt aactgtccaa gatgataata acatcgttgt ctcattagaa gcttcagacg
361 tcatcagtcc agcatctgtg tatgttgtga agataactgg tgaatccaaa aattatttct
421 tcgaatttga ggaattcaac agcactttgc ctcctcctgt tattttcaag gccagttatc
481 atggccttta ttatataatc actctggtag tggtaaatgg aaatgtggtg accaagccat
541 ccagatcaat cactgtgtta acaaaacctc tacctgtaac cagtgtttcc atatatgact
601 ataaaccttc tcctgaaaca ggagtcctgt ttgaaataca ttatccagaa aaatataacg
661 ttttcacaag agtgaacatt agctactggg aaggtaaaga cttccggaca atgctatata
721 aagatttctt taagggaaaa acagtattta atcactggct gccaggaatg tgttatagta
781 atatcacctt tcagctggta tctgaggcaa cttttaataa aagtaccctt gttgagtaca
841 gtggtgtcag tcacgaaccc aaacagcaca gaactgcccc ttatccacct caaaatattt
901 ccgttcgtat cgtaaacttg aacaaaaaca actgggaaga acagagtggc aatttcccag
961 aagaatcctt catgagatca caagatacaa taggaaaaga aaaactcttc cattttacag
1021 aagaaacccc tgaaattccc tcgggcaaca tttcttccgg ttggcctgat tttaatagca
1081 gtgactatga aactacgtct cagccatatt ggtgggacag tgcatctgca gctcctgaaa
1141 gtgaagatga atttgtcagc gtacttccca tggaatacga aaataacagt acactcagtg
1201 agacagagaa gtcaacatca ggctctttct cctttttccc tgtgcaaatg atattgacct
1261 ggttaccacc caaaccaccc actgcttttg atgggttcca tatccatatt gaacgagaag
1321 agaactttac tgaatatttg atggtggatg aagaagcaca tgaatttgtt gcagaactga
1381 aggaacctgg gagatataag ttatctgtga caacctttag ttcctcagga tcttgtgaaa
1441 ctcgaaaaag tcagtcagca aaatcactca gcttttatat cagtccttca ggagagtgga
1501 ttgaagaact gaccgagaag ccgcagcacg tgagtgtcca cgttttaagc tcaaccactg
1561 ccttgatgtc ctggacatct tcccaagaga actacaacag caccattgtg tctgtggtgt
1621 cgctgacctg ccagaaacaa aaggagagcc agaggcttga aaagcagtac tgcactcagg
1681 tgaactcaag caaacctatt attgaaaatc tggttcctgg tgcccagtac caggttgtaa
1741 tatacctaag gaaaggccct ttgattggac caccttcaga tcctgtgaca tttgctattg
1801 ttcccacagg aataaaggat ttaatgctct atcctttggg tcctacggcc gtggttctga
1861 gctggaccag accttattta ggcgtgttca gaaaatacgt ggttgaaatg ttttatttca
1921 accctgctac aatgacatca gagtggacca cctactatga aatagcagca actgtttcct
1981 taactgcatc cgtgagaata gctaatctgc tgccagcatg gtactacaac ttccgggtta
2041 ccatggtgac gtggggagat ccagaattga gctgctgtga cagctctacc atcagcttca
2101 taacagcccc agtggctccg gaaatcactt ctgtggaata tttcaacagt ctgttatata
2161 tcagttggac atatggggat gatacaacgg acttgtccca ttctagaatg cttcactgga
2221 tggtggttgc agaaggaaaa aagaaaatta aaaagagtgt aacacgcaat gtcatgactg
2281 caattctcag cttgcctcca ggcgacatct ataacctctc agtaactgct tgtactgaaa
2341 gaggaagtaa tacctccatg ctccgccttg tcaagctaga accagctcca cccaaatcac
2401 tcttcgcagt gaacaaaacc cagacttcag tgactttgct gtgggtggaa gagggagtag
2461 ctgatttctt tgaagttttc tgtcaacaag ttggctccag tcagaaaacc aaacttcagg
2521 aaccagttgc tgtttcttcc catgtcgtga ccatctccag ccttcttcct gccactgcct
2581 acaattgtag tgtcaccagc tttagccatg acagccccag tgtccctacg ttcatagccg
2641 tctcaacaat ggttacagag atgaatccca atgtggtagt gatctccgtg ctggccatcc
2701 ttagcacact tttaattgga ctgttgcttg ttaccctcat tattcttagg aaaaagcatc
2761 tgcagatggc tagggagtgt ggagctggta catttgtcaa ttttgcatcc ttagagaggg
2821 atggaaagct tccatacaac tggcgtagga gtatatttgc tttcttaacc ctgctaccct
2881 catgtctttg gactgattat cttttggcat tttatattaa tccttggagt aaaaatggtt
2941 taaagaagag gaaactgaca aacccggttc aactggatga ctttgatgcc tatattaagg
3001 atatggccaa agactctgac tataaatttt ctcttcagtt tgaggagttg aaattgattg
3061 gactggatat cccacacttt gctgcagatc ttccactgaa tcgatgtaaa aaccgttaca
3121 caaacatcct accatatgac ttcagccgtg tgagattagt ctccatgaat gaagaggaag
3181 gtgcagacta catcaatgcc aactatattc ctggatacaa ctcaccccag gagtatattg
3241 ccacccaggg gccactgcct gaaaccagaa atgacttctg gaagatggtc ctgcaacaaa
3301 agtctcagat tattgtcatg ctcactcagt gtaatgagaa aaggagggtg aaatgtgacc
3361 attactggcc attcacggaa gaacctatag cctatggaga catcactgtg gagatgattt
3421 cagaggaaga gcaggacgac tgggcctgta gacacttccg gatcaactat gctgacgaga
3481 tgcaggatgt gatgcatttt aactacactg catggcctga tcatggtgtg cccacagcaa
3541 atgctgcaga aagtatcctg cagtttgtac acatggtccg acagcaagct accaagagca
3601 aaggtcccat gatcattcac tgcagtgctg gcgtgggacg gacaggaaca ttcattgccc
3661 tggacaggct cttgcagcac attcgggatc atgagtttgt tgacatctta gggctggtgt
3721 cagaaatgag gtcataccgg atgtctatgg tacagacaga ggagcagtac atttttatcc
3781 atcagtgtgt gcaactgatg tggatgaaga agaagcagca gttctgcatc agtgatgtca
3841 tatacgagaa tgttagcaag tcctagttca gaatccggag cagagaggac atgatgtgcg
3901 cccatcctcc cttgcttcca gattgtttta gtgggccctg atggtcattt ttctaaacag
3961 aggccctgct ttgtaatatg tggccaagga gataatttat ctcacagaag caccgggaag
4021 acttagcctt aaagagccta cagtgtcctt ttggactctt tcacttcggg acatttaata
4081 atggaccaaa ttcaacagaa caccaggaag gtcaagacgc tctccaaagg gcaggaagta
4141 cagcacttcc gaagagttta gttggccctt tgctggttgg gctgagtttt ttatttttaa
4201 gtgtttgttt ttcagtgcaa taatttttgt gtgtgtgtga ttcttatcag aaagttgaat
4261 tgttttctgc ctacaccgtt catcagcccc ataacccagg aaggaacagg cattgttagc
4321 atcagattat acctcattat taaaaggagg catggccaca catgaagaaa tggtcattct
4381 acttcaaaga aattgagcca gcactatctg tactccaaca ttaccggatc tggattgggg
4441 aggttggtca gggaagagag gggttctacc cacagatcaa ctgtgtaatc ttttactatt
4501 caagctataa ttcagcttca aagtagagta gaaaaaaaat tgtct
//