LOCUS AK289698 2570 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ78592 complete cds, highly similar to Homo
sapiens contactin 1, mRNA.
ACCESSION AK289698
VERSION AK289698.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2570)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..2570
/clone="BRAMY4002879"
/clone_lib="BRAMY4"
/db_xref="H-InvDB:HIT000422495"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 170..2053
/codon_start=1
/note="highly similar to Homo sapiens contactin 1, mRNA"
/protein_id="BAF82387.1"
/transl_table=1
/translation="MKMWLLVSHLVIISITTCLAEFTWYRRYGHGVSEEDKGFGPIFE
EQPINTIYPEESLEGKVSLNCRARASPFPVYKWRMNNGDVDLTSDRYSMVGGNLVINN
PDKQKDAGIYYCLASNNYGMVRSTEATLSFGYLDPFPPEERPEVRVKEGKGMVLLCDP
PYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSI
TKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWR
KVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQAFPEWV
EHINDTEVDIGSDLYWPCVATGKPIPTIRWLKNGYAYHKGELRLYDVTFENAGMYQCI
AENTYGAIYANAELKILALAPTFEMNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSK
GTEWLVNSSRILIWEDGSLEINNITRNDGGIYTCFAENNRGKANSTGTLVITDPTRII
LAPINADITVGENATMQCAASFDPALDLTFVWSFNGYVIDFNKENIHYQRNFMLDSNG
ELLIRNAQLKHAGRYTCTAQTIVDNSSASADLVVRGKNRKGGEKNMVDSFLPVCASLP
PTW"
BASE COUNT 796 a 494 c 553 g 727 t
ORIGIN
1 gagatgcgct cccaggtgtt tgcagcggaa gtgggaaacc tgtagggtat ggtccagctg
61 tgccgcaccg aggcgagcag gagcagggaa caggtgttta aaattatcca actgccatag
121 agctaaattc ttttttggaa aattgaaccg aacttctact gaatacaaga tgaaaatgtg
181 gttgctggtc agtcatcttg tgataatatc tattactacc tgtttagcag agtttacatg
241 gtatagaaga tatggtcatg gagtttctga ggaagacaaa ggatttggac caatttttga
301 agagcagcca atcaatacca tttatccaga ggaatcactg gaaggaaaag tctcactcaa
361 ctgtagggca cgagccagcc ctttcccggt ttacaaatgg agaatgaata atggggacgt
421 tgatctcaca agtgatcgat acagtatggt aggaggaaac cttgttatca acaaccctga
481 caaacagaaa gatgctggaa tatactactg tttagcatct aataactacg ggatggtcag
541 aagcactgaa gcaaccctga gctttggata tcttgatcct ttcccacctg aggaacgtcc
601 tgaggtcaga gtaaaagaag ggaaaggaat ggtgcttctc tgtgaccccc cataccattt
661 tccagatgat cttagctatc gctggcttct aaatgaattt cctgtattta tcacaatgga
721 taaacggcga tttgtgtctc agacaaatgg caatctctac attgcaaatg ttgaggcttc
781 cgacaaaggc aattattcct gctttgtttc cagtccttct attacaaaga gcgtgttcag
841 caaattcatc ccactcattc caatacctga acgaacaaca aaaccatatc ctgctgatat
901 tgtagttcag ttcaaggatg tatatgcatt gatgggccaa aatgtgacct tagaatgttt
961 tgcacttgga aatcctgttc cggatatccg atggcggaag gttctagaac caatgccaag
1021 cactgctgag attagcacct ctggggctgt tcttaagatc ttcaatattc agctagaaga
1081 tgaaggcatc tatgaatgtg aggctgagaa cattagagga aaggataaac atcaagcaag
1141 aatttatgtt caagcattcc ctgagtgggt agaacacatc aatgacacag aggtggacat
1201 aggcagtgat ctctactggc cttgtgtggc cacaggaaag cccatcccta caatccgatg
1261 gttgaaaaat ggatatgcgt atcataaagg ggaattaaga ctgtatgatg tgacttttga
1321 aaatgccgga atgtatcagt gcatagctga aaacacatat ggagccattt atgcaaatgc
1381 tgagttgaag atcttggcgt tggctccaac ttttgaaatg aatcctatga agaaaaagat
1441 cctggctgct aaaggtggaa gggtgataat tgaatgcaaa cctaaagctg caccgaaacc
1501 aaagttttca tggagtaaag ggacagagtg gcttgtcaat agcagcagaa tactcatttg
1561 ggaagatggt agcttggaaa tcaataacat tacaaggaat gatggaggta tctatacatg
1621 ctttgcagaa aataacagag ggaaagctaa tagcactgga acccttgtta tcacagatcc
1681 tacgcgaatt atattggccc caattaatgc cgatatcaca gttggagaaa acgccaccat
1741 gcagtgtgct gcgtcctttg atcctgcctt ggatctcaca tttgtttggt ccttcaatgg
1801 ctatgtgatc gattttaaca aagagaatat tcactaccag aggaatttta tgctggattc
1861 caatggggaa ttactaatcc gaaatgcgca gctgaaacat gctggaagat acacatgcac
1921 tgcccagaca attgtggaca attcttcagc ttcagctgac cttgtagtga gaggtaaaaa
1981 cagaaaaggt ggagagaaaa acatggtgga ttcctttctc cccgtctgtg caagcctgcc
2041 tccaacctgg tgatcgttga cactcaccat ttctgtgaaa gacttttttt tttttaacat
2101 attatactag atttgactaa ctcaatcttg tagcttctgc agttctcccc acccccaacc
2161 tagttcttag agtatgtttc cccttttgaa acatgtaaac atactttggg cataaatatt
2221 ttttaaaata taactataat gcttcactaa taccttaaaa atgcctagtg aactaactca
2281 gtacattata taatggccaa gtgaaagttt tgtgttttca tgtcctgttt ttctttgaaa
2341 ttatatagcc cagaaattag ctcattatct gaaaaacgta tgaagaactg atgaattgta
2401 taatacagga gtattgccat tgaatgtact gtttgattta ttcaagcagg taatgaacaa
2461 tgttgtcaaa ctctctaatg agacatcata attaggacat aagctaaaag gggcattact
2521 ccggcagtct ttttttctta atcctagtac catacatatt ctttggcatg
//