LOCUS AK289681 1573 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ75228 complete cds, highly similar to Homo
sapiens bestrophin (VMD2) mRNA, alternatively spliced product.
ACCESSION AK289681
VERSION AK289681.1
KEYWORDS FLI_CDNA; oligo capping.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 1573)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (09-OCT-2007) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Reverse Proteomics Research Institute; 1-9-11 Kaji-cho,
Chiyoda-ku, Tokyo 101-0044, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Wakamatsu,A., Yamamoto,J., Kimura,K., Ishii,S., Watanabe,K.,
Sugiyama,A., Murakawa,K., Kaida,T., Tsuchiya,K., Fukuzumi,Y.,
Kumagai,A., Oishi,Y., Yamamoto,S., Ono,Y., Komori,Y., Yamazaki,M.,
Kisu,Y., Nishikawa,T., Sugano,S., Nomura,N. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2007)
COMMENT Human cDNA sequencing project focused on splicing variants of mRNA
in NEDO functional analysis of protein and research application
project supported by Ministry of Economy, Trade and Industry,
Japan; cDNA selection for complete cds sequencing: Reverse
Proteomics Research Institute (REPRORI), Hitachi, Ltd., Japan
(Hitachi) and Japan Biological Informatics Consortium, Japan
(JBIC); cDNA complete cds sequencing: JBIC; cDNA library
construction: Helix Research Institute supported by Japan Key
Technology Center, Japan (HRI); cDNA 5'- & 3'-end sequencing:
Research Association for Biotechnology, Japan, Biotechnology
Center, National Institute of Technology and Evaluation, Japan and
HRI; cDNA mapping to human genome: Central Research Laboratory,
Hitachi; evaluation and annotation: REPRORI.
FEATURES Location/Qualifiers
source 1..1573
/clone="BRAMY3010532"
/clone_lib="BRAMY3"
/db_xref="H-InvDB:HIT000422478"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="amygdala"
CDS 109..1416
/codon_start=1
/note="highly similar to Homo sapiens bestrophin (VMD2)
mRNA, alternatively spliced product"
/protein_id="BAF82370.1"
/transl_table=1
/translation="MTITYTSQVANARLGSFSRLLLCWRGSIYKLLYGEFLIFLLCYY
IIRFIYRLALTEEQQLMFEKLTLYCDSYIQLIPISFVLGFYVTLVVTRWWNQYENLPW
PDRLMSLVSGFVEGKDEQGRLLRRTLIRYANLGNVLILRSVSTAVYKRFPSAQHLVQA
GFMTPAEHKQLEKLSLPHNMFWVPWVWFANLSMKAWLGGRIRDPILLQSLLNEMNTLR
TQCGHLYAYDWISIPLVYTQVVTVAVYSFFLTCLVGRQFLNPAKAYPGHELDLVVPVF
TFLQFFFYVGWLKVGLSRALLGWRHGQRGHGQQLPETRMQCQERKVSRVESSQAWWRT
PVIPATREAEAGESLEPGRRRLWWQSSSSTPLERMMMILRPTGLSTGICRCPCWLWMR
CTRTCLGWSRTCTGISPSHSPPTQLLPPSSVEPPLWAPPSTSA"
BASE COUNT 325 a 472 c 442 g 334 t
ORIGIN
1 gtcccaggga gtcccaccag cctagtcgcc agaccttctg tgggatcatc ggacccacct
61 ggaaccccac ctgacccaag cccacctgct gcagcccact gcctggccat gaccatcact
121 tacacaagcc aagtggctaa tgcccgctta ggctccttct cccgcctgct gctgtgctgg
181 cggggcagca tctacaagct gctatatggc gagttcttaa tcttcctgct ctgctactac
241 atcatccgct ttatttatag gctggccctc acggaagaac aacagctgat gtttgagaaa
301 ctgactctgt attgcgacag ctacatccag ctcatcccca tttccttcgt gctgggcttc
361 tacgtgacgc tggtcgtgac ccgctggtgg aaccagtacg agaacctgcc gtggcccgac
421 cgcctcatga gcctggtgtc gggcttcgtc gaaggcaagg acgagcaagg ccggctgctg
481 cggcgcacgc tcatccgcta cgccaacctg ggcaacgtgc tcatcctgcg cagcgtcagc
541 accgcagtct acaagcgctt ccccagcgcc cagcacctgg tgcaagcagg ctttatgact
601 ccggcagaac acaagcagtt ggagaaactg agcctaccac acaacatgtt ctgggtgccc
661 tgggtgtggt ttgccaacct gtcaatgaag gcgtggcttg gaggtcgaat ccgggaccct
721 atcctgctcc agagcctgct gaacgagatg aacaccttgc gtactcagtg tggacacctg
781 tatgcctacg actggattag tatcccactg gtgtatacac aggtggtgac tgtggcggtg
841 tacagcttct tcctgacttg tctagttggg cggcagtttc tgaacccagc caaggcctac
901 cctggccatg agctggacct cgttgtgccc gtcttcacgt tcctgcagtt cttcttctat
961 gttggctggc tgaaggtggg cctctccagg gccctgctgg gctggaggca tggccagagg
1021 ggtcatggcc agcagctgcc tgagacgagg atgcagtgtc aggaaaggaa ggtctcacgg
1081 gtagaaagca gccaggcgtg gtggcgcaca cctgtaatcc cagctactcg ggaggctgag
1141 gcaggagaat cgcttgaacc cgggaggcgg aggttgtggt ggcagagcag ctcatcaacc
1201 cctttggaga ggatgatgat gattttgaga ccaactggat tgtcgacagg aatttgcagg
1261 tgtccctgtt ggctgtggat gagatgcacc aggacctgcc tcggatggag ccggacatgt
1321 actggaataa gcccgagcca cagcccccct acacagctgc ttccgcccag ttccgtcgag
1381 cctcctttat gggctccacc ttcaacatca gcctgaacaa agaggagatg gagttccagc
1441 ccaatcagga ggacgaggag gatgctcacg ctggcatcat tggccgcttc ctaggcctgc
1501 agtcccatga tcaccatcct cccagggcaa actcaaggac caaactactg tggcccaaga
1561 gggaatccct tct
//